AIMC Topic: Data Mining

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Expanding the drug discovery space with predicted metabolite-target interactions.

Communications biology
Metabolites produced in the human gut are known modulators of host immunity. However, large-scale identification of metabolite-host receptor interactions remains a daunting challenge. Here, we employed computational approaches to identify 983 potenti...

Individualized prediction of COVID-19 adverse outcomes with MLHO.

Scientific reports
The COVID-19 pandemic has devastated the world with health and economic wreckage. Precise estimates of adverse outcomes from COVID-19 could have led to better allocation of healthcare resources and more efficient targeted preventive measures, includi...

Using neural networks to mine text and predict metabolic traits for thousands of microbes.

PLoS computational biology
Microbes can metabolize more chemical compounds than any other group of organisms. As a result, their metabolism is of interest to investigators across biology. Despite the interest, information on metabolism of specific microbes is hard to access. I...

A message-passing multi-task architecture for the implicit event and polarity detection.

PloS one
Implicit sentiment analysis is a challenging task because the sentiment of a text is expressed in a connotative manner. To tackle this problem, we propose to use textual events as a knowledge source to enrich network representations. To consider task...

A review on current advances in machine learning based diabetes prediction.

Primary care diabetes
Diabetes is a metabolic disorder comprising of high glucose level in blood over a prolonged period in the body as it is not capable of using it properly. The severe complications associated with diabetes include diabetic ketoacidosis, nonketotic hype...

Multimodal Learning of Social Image Representation by Exploiting Social Relations.

IEEE transactions on cybernetics
Learning the representation for social images has recently made remarkable achievements for many tasks, such as cross-modal retrieval and multilabel classification. However, since social images contain both multimodal contents (e.g., visual images an...

Systematic auditing is essential to debiasing machine learning in biology.

Communications biology
Biases in data used to train machine learning (ML) models can inflate their prediction performance and confound our understanding of how and what they learn. Although biases are common in biological data, systematic auditing of ML models to identify ...

Computational approach for identification, characterization, three-dimensional structure modelling and machine learning-based thermostability prediction of xylanases from the genome of Aspergillus fumigatus.

Computational biology and chemistry
Identification of thermostable and alkaline xylanases from different fungal and bacterial species have gained an interest for the researchers because of its biotechnological relevance in many industries, such as pulp, paper, and bioethanol. In this s...

Task Similarity Estimation Through Adversarial Multitask Neural Network.

IEEE transactions on neural networks and learning systems
Multitask learning (MTL) aims at solving the related tasks simultaneously by exploiting shared knowledge to improve performance on individual tasks. Though numerous empirical results supported the notion that such shared knowledge among tasks plays a...