AIMC Topic: Data Mining

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Ontology-guided machine learning outperforms zero-shot foundation models for cardiac ultrasound text reports.

Scientific reports
Big data can revolutionize research and quality improvement for cardiac ultrasound. Text reports are a critical part of such analyses. Cardiac ultrasound reports include structured and free text and vary across institutions, hampering attempts to min...

RADEX: a rule-based clinical and radiology data extraction tool demonstrated on thyroid ultrasound reports.

European radiology
OBJECTIVES: Radiology reports contain valuable information for research and audits, but relevant details are often buried within free-text fields. This makes them challenging and time-consuming to extract for secondary analyses, including training ar...

Visualizing what's missing: Using deep learning and Bow-Tie diagrams to identify and visualize missing leading indicators in industrial construction.

Journal of safety research
INTRODUCTION: In the construction industry, where safety is paramount, the frequency and severity of workplace incidents remain critical concerns. Therefore, site safety inspections have become essential for health and safety programs. While incident...

Cost-Efficient Domain-Adaptive Pretraining of Language Models for Optoelectronics Applications.

Journal of chemical information and modeling
Pretrained language models have demonstrated strong capability and versatility in natural language processing (NLP) tasks, and they have important applications in optoelectronics research, such as data mining and topic modeling. Many language models ...

Partial Annotation Learning for Biomedical Entity Recognition.

IEEE journal of biomedical and health informatics
Named Entity Recognition (NER) is a key task to support biomedical research. In Biomedical Named Entity Recognition (BioNER), obtaining high-quality expert annotated data is laborious and expensive, leading to the development of automatic approaches ...

Improving entity recognition using ensembles of deep learning and fine-tuned large language models: A case study on adverse event extraction from VAERS and social media.

Journal of biomedical informatics
OBJECTIVE: Adverse event (AE) extraction following COVID-19 vaccines from text data is crucial for monitoring and analyzing the safety profiles of immunizations, identifying potential risks and ensuring the safe use of these products. Traditional dee...

Information Extraction from Clinical Texts with Generative Pre-trained Transformer Models.

International journal of medical sciences
Processing and analyzing clinical texts are challenging due to its unstructured nature. This study compared the performance of GPT (Generative Pre-trained Transformer)-3.5 and GPT-4 for extracting information from clinical text. Three types of clin...

Biomedical named entity recognition using improved green anaconda-assisted Bi-GRU-based hierarchical ResNet model.

BMC bioinformatics
BACKGROUND: Biomedical text mining is a technique that extracts essential information from scientific articles using named entity recognition (NER). Traditional NER methods rely on dictionaries, rules, or curated corpora, which may not always be acce...

Decision tree-based learning and laboratory data mining: an efficient approach to amebiasis testing.

Parasites & vectors
BACKGROUND: Amebiasis represents a significant global health concern. This is especially evident in developing countries, where infections are more common. The primary diagnostic method in laboratories involves the microscopy of stool samples. Howeve...

Extracting Housing and Food Insecurity Information From Clinical Notes Using cTAKES.

Health services research
OBJECTIVE: To assess the utility and challenges of using natural language processing (NLP) in electronic health records (EHRs) to ascertain health-related social needs (HRSNs) among older adults.