AIMC Topic: Deep Learning

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EDLmAPred: ensemble deep learning approach for mRNA mA site prediction.

BMC bioinformatics
BACKGROUND: As a common and abundant RNA methylation modification, N6-methyladenosine (mA) is widely spread in various species' transcriptomes, and it is closely related to the occurrence and development of various life processes and diseases. Thus, ...

Deep Learning Improves the Temporal Reproducibility of Aortic Measurement.

Journal of digital imaging
Imaging-based measurements form the basis of surgical decision making in patients with aortic aneurysm. Unfortunately, manual measurement suffer from suboptimal temporal reproducibility, which can lead to delayed or unnecessary intervention. We teste...

Protein Structure Prediction: Conventional and Deep Learning Perspectives.

The protein journal
Protein structure prediction is a way to bridge the sequence-structure gap, one of the main challenges in computational biology and chemistry. Predicting any protein's accurate structure is of paramount importance for the scientific community, as the...

Enhancing CRISPR-Cas9 gRNA efficiency prediction by data integration and deep learning.

Nature communications
The design of CRISPR gRNAs requires accurate on-target efficiency predictions, which demand high-quality gRNA activity data and efficient modeling. To advance, we here report on the generation of on-target gRNA activity data for 10,592 SpCas9 gRNAs. ...

A deep learning system for detecting diabetic retinopathy across the disease spectrum.

Nature communications
Retinal screening contributes to early detection of diabetic retinopathy and timely treatment. To facilitate the screening process, we develop a deep learning system, named DeepDR, that can detect early-to-late stages of diabetic retinopathy. DeepDR ...

A deep learning algorithm for 3D cell detection in whole mouse brain image datasets.

PLoS computational biology
Understanding the function of the nervous system necessitates mapping the spatial distributions of its constituent cells defined by function, anatomy or gene expression. Recently, developments in tissue preparation and microscopy allow cellular popul...

LSTMCNNsucc: A Bidirectional LSTM and CNN-Based Deep Learning Method for Predicting Lysine Succinylation Sites.

BioMed research international
Lysine succinylation is a typical protein post-translational modification and plays a crucial role of regulation in the cellular process. Identifying succinylation sites is fundamental to explore its functions. Although many computational methods wer...

Artificial Intelligence and Medical Internet of Things Framework for Diagnosis of Coronavirus Suspected Cases.

Journal of healthcare engineering
The world has been facing the COVID-19 pandemic since December 2019. Timely and efficient diagnosis of COVID-19 suspected patients plays a significant role in medical treatment. The deep transfer learning-based automated COVID-19 diagnosis on chest X...

Gender-Based Deep Learning Firefly Optimization Method for Test Data Generation.

Computational intelligence and neuroscience
Software testing is a widespread validation means of software quality assurance in industry. Intelligent optimization algorithms have been proved to be an effective way of automatic test data generation. Firefly algorithm has received extensive atten...

Application of artificial intelligence deep learning in numerical simulation of seawater intrusion.

Environmental science and pollution research international
Seawater intrusion not only causes fresh water shortages in coastal areas, but also has a negative impact on regional economic and social development. Global climate change will affect precipitation, sea level, and many other factors, which will in t...