AIMC Topic: Machine Learning

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3D printed biomimetic cochleae and machine learning co-modelling provides clinical informatics for cochlear implant patients.

Nature communications
Cochlear implants restore hearing in patients with severe to profound deafness by delivering electrical stimuli inside the cochlea. Understanding stimulus current spread, and how it correlates to patient-dependent factors, is hampered by the poor acc...

End-to-end learning for compound activity prediction based on binding pocket information.

BMC bioinformatics
BACKGROUND: Recently, machine learning-based ligand activity prediction methods have been greatly improved. However, if known active compounds of a target protein are unavailable, the machine learning-based method cannot be applied. In such cases, do...

adabmDCA: adaptive Boltzmann machine learning for biological sequences.

BMC bioinformatics
BACKGROUND: Boltzmann machines are energy-based models that have been shown to provide an accurate statistical description of domains of evolutionary-related protein and RNA families. They are parametrized in terms of local biases accounting for resi...

Quantifying the Impacts of Pre- and Post-Conception TSH Levels on Birth Outcomes: An Examination of Different Machine Learning Models.

Frontiers in endocrinology
BACKGROUND: While previous studies identified risk factors for diverse pregnancy outcomes, traditional statistical methods had limited ability to quantify their impacts on birth outcomes precisely. We aimed to use a novel approach that applied differ...

Screening of key biomarkers of tendinopathy based on bioinformatics and machine learning algorithms.

PloS one
Tendinopathy is a complex multifaceted tendinopathy often associated with overuse and with its high prevalence resulting in significant health care costs. At present, the pathogenesis and effective treatment of tendinopathy are still not sufficiently...

The promise of automated machine learning for the genetic analysis of complex traits.

Human genetics
The genetic analysis of complex traits has been dominated by parametric statistical methods due to their theoretical properties, ease of use, computational efficiency, and intuitive interpretation. However, there are likely to be patterns arising fro...

How doppelgänger effects in biomedical data confound machine learning.

Drug discovery today
Machine learning (ML) models have been increasingly adopted in drug development for faster identification of potential targets. Cross-validation techniques are commonly used to evaluate these models. However, the reliability of such validation method...

Effects of dataset size and interactions on the prediction performance of logistic regression and deep learning models.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVE: Machine learning and deep learning models are very powerful in predicting the presence of a disease. To achieve good predictions, those models require a certain amount of data to train on, whereas this amount i) is generally...

Learning-based synthetic dual energy CT imaging from single energy CT for stopping power ratio calculation in proton radiation therapy.

The British journal of radiology
OBJECTIVE: Dual energy CT (DECT) has been shown to estimate stopping power ratio (SPR) map with a higher accuracy than conventional single energy CT (SECT) by obtaining the energy dependence of photon interactions. This work presents a learning-based...