AI Medical Compendium Topic

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Models, Biological

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Multispecies deep learning using citizen science data produces more informative plant community models.

Nature communications
In the age of big data, scientific progress is fundamentally limited by our capacity to extract critical information. Here, we map fine-grained spatiotemporal distributions for thousands of species, using deep neural networks (DNNs) and ubiquitous ci...

Brain Deformation Estimation With Transfer Learning for Head Impact Datasets Across Impact Types.

IEEE transactions on bio-medical engineering
OBJECTIVE: The machine-learning head model (MLHM) to accelerate the calculation of brain strain and strain rate, which are the predictors for traumatic brain injury (TBI), but the model accuracy was found to decrease sharply when the training/test da...

Design and control of jumping microrobots with torque reversal latches.

Bioinspiration & biomimetics
Jumping microrobots and insects power their impressive leaps through systems of springs and latches. Using springs and latches, rather than motors or muscles, as actuators to power jumps imposes new challenges on controlling the performance of the ju...

Construction of an enzyme-constrained metabolic network model for Myceliophthora thermophila using machine learning-based k data.

Microbial cell factories
BACKGROUND: Genome-scale metabolic models (GEMs) serve as effective tools for understanding cellular phenotypes and predicting engineering targets in the development of industrial strain. Enzyme-constrained genome-scale metabolic models (ecGEMs) have...

Using neural ordinary differential equations to predict complex ecological dynamics from population density data.

Journal of the Royal Society, Interface
Simple models have been used to describe ecological processes for over a century. However, the complexity of ecological systems makes simple models subject to modelling bias due to simplifying assumptions or unaccounted factors, limiting their predic...

Predicting the clinical subcutaneous absorption rate constant of monoclonal antibodies using only the primary sequence: a machine learning approach.

mAbs
Subcutaneous injections are an increasingly prevalent route of administration for delivering biological therapies including monoclonal antibodies (mAbs). Compared with intravenous delivery, subcutaneous injections reduce administration costs, shorten...

The Impact of Drop Test Conditions on Brain Strain Location and Severity: A Novel Approach Using a Deep Learning Model.

Annals of biomedical engineering
In contact sports such as rugby, players are at risk of sustaining traumatic brain injuries (TBI) due to high-intensity head impacts that generate high linear and rotational accelerations of the head. Previous studies have established a clear link be...

A gray box framework that optimizes a white box logical model using a black box optimizer for simulating cellular responses to perturbations.

Cell reports methods
Predicting cellular responses to perturbations requires interpretable insights into molecular regulatory dynamics to perform reliable cell fate control, despite the confounding non-linearity of the underlying interactions. There is a growing interest...

Another string to your bow: machine learning prediction of the pharmacokinetic properties of small molecules.

Expert opinion on drug discovery
INTRODUCTION: Prediction of pharmacokinetic (PK) properties is crucial for drug discovery and development. Machine-learning (ML) models, which use statistical pattern recognition to learn correlations between input features (such as chemical structur...