AIMC Topic: Plants

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Mirnacle: machine learning with SMOTE and random forest for improving selectivity in pre-miRNA ab initio prediction.

BMC bioinformatics
BACKGROUND: MicroRNAs (miRNAs) are key gene expression regulators in plants and animals. Therefore, miRNAs are involved in several biological processes, making the study of these molecules one of the most relevant topics of molecular biology nowadays...

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants.

Journal of biomedical semantics
BACKGROUND: The systematic analysis of a large number of comparable plant trait data can support investigations into phylogenetics and ecological adaptation, with broad applications in evolutionary biology, agriculture, conservation, and the function...

Hybrid Artificial Root Foraging Optimizer Based Multilevel Threshold for Image Segmentation.

Computational intelligence and neuroscience
This paper proposes a new plant-inspired optimization algorithm for multilevel threshold image segmentation, namely, hybrid artificial root foraging optimizer (HARFO), which essentially mimics the iterative root foraging behaviors. In this algorithm ...

DRPPP: A machine learning based tool for prediction of disease resistance proteins in plants.

Computers in biology and medicine
Plant disease outbreak is increasing rapidly around the globe and is a major cause for crop loss worldwide. Plants, in turn, have developed diverse defense mechanisms to identify and evade different pathogenic microorganisms. Early identification of ...

Prediction of bacterial associations with plants using a supervised machine-learning approach.

Environmental microbiology
Recent scenarios of fresh produce contamination by human enteric pathogens have resulted in severe food-borne outbreaks, and a new paradigm has emerged stating that some human-associated bacteria can use plants as secondary hosts. As a consequence, t...

Machine Learning and Computer Vision System for Phenotype Data Acquisition and Analysis in Plants.

Sensors (Basel, Switzerland)
Phenomics is a technology-driven approach with promising future to obtain unbiased data of biological systems. Image acquisition is relatively simple. However data handling and analysis are not as developed compared to the sampling capacities. We pre...

g:Profiler-a web server for functional interpretation of gene lists (2016 update).

Nucleic acids research
Functional enrichment analysis is a key step in interpreting gene lists discovered in diverse high-throughput experiments. g:Profiler studies flat and ranked gene lists and finds statistically significant Gene Ontology terms, pathways and other gene ...

Ecological systems as computer networks: Long distance sea dispersal as a communication medium between island plant populations.

Bio Systems
Ecological systems are known to exchange genetic material through animal species migration and seed dispersal for plants. Isolated plant populations have developed long distance dispersal as a means of propagation which rely on meteorological such as...

Machine Learning for High-Throughput Stress Phenotyping in Plants.

Trends in plant science
Advances in automated and high-throughput imaging technologies have resulted in a deluge of high-resolution images and sensor data of plants. However, extracting patterns and features from this large corpus of data requires the use of machine learnin...