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Probability

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Universal probabilistic programming offers a powerful approach to statistical phylogenetics.

Communications biology
Statistical phylogenetic analysis currently relies on complex, dedicated software packages, making it difficult for evolutionary biologists to explore new models and inference strategies. Recent years have seen more generic solutions based on probabi...

Fast convergence rates of deep neural networks for classification.

Neural networks : the official journal of the International Neural Network Society
We derive the fast convergence rates of a deep neural network (DNN) classifier with the rectified linear unit (ReLU) activation function learned using the hinge loss. We consider three cases for a true model: (1) a smooth decision boundary, (2) smoot...

Modeling the predictive potential of extralinguistic context with script knowledge: The case of fragments.

PloS one
We describe a novel approach to estimating the predictability of utterances given extralinguistic context in psycholinguistic research. Predictability effects on language production and comprehension are widely attested, but so far predictability has...

Ensemble machine learning prediction and variable importance analysis of 5-year mortality after cardiac valve and CABG operations.

Scientific reports
Despite having a similar post-operative complication profile, cardiac valve operations are associated with a higher mortality rate compared to coronary artery bypass grafting (CABG) operations. For long-term mortality, few predictors are known. In th...

Nonhuman rationality: a predictive coding perspective.

Cognitive processing
How can we rethink 'rationality' in the wake of animal and artificial intelligence studies? Can nonhuman systems be rational in any nontrivial sense? In this paper, we propose that all organisms, under certain circumstances, exhibit rationality to a ...

Scaffold-Constrained Molecular Generation.

Journal of chemical information and modeling
One of the major applications of generative models for drug discovery targets the lead-optimization phase. During the optimization of a lead series, it is common to have scaffold constraints imposed on the structure of the molecules designed. Without...

Synchronization of Coupled Time-Delay Neural Networks With Mode-Dependent Average Dwell Time Switching.

IEEE transactions on neural networks and learning systems
In the literature, the effects of switching with average dwell time (ADT), Markovian switching, and intermittent coupling on stability and synchronization of dynamic systems have been extensively investigated. However, all of them are considered sepa...

Using the National Trauma Data Bank (NTDB) and machine learning to predict trauma patient mortality at admission.

PloS one
A 400-estimator gradient boosting classifier was trained to predict survival probabilities of trauma patients. The National Trauma Data Bank (NTDB) provided 799233 complete patient records (778303 survivors and 20930 deaths) each containing 32 featur...

Layer Embedding Analysis in Convolutional Neural Networks for Improved Probability Calibration and Classification.

IEEE transactions on medical imaging
In this project, our goal is to develop a method for interpreting how a neural network makes layer-by-layer embedded decisions when trained for a classification task, and also to use this insight for improving the model performance. To do this, we fi...