AIMC Topic: RNA, Long Noncoding

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Recent Advances on the Semi-Supervised Learning for Long Non-Coding RNA-Protein Interactions Prediction: A Review.

Protein and peptide letters Jan 1, 2020
In recent years, more and more evidence indicates that long non-coding RNA (lncRNA) plays a significant role in the development of complex biological processes, especially in RNA progressing, chromatin modification, and cell differentiation, as well ...
Databases, Protein Models, Molecular Supervised Machine Learning RNA, Long Noncoding Proteins Databases, Nucleic Acid Humans Software Computer Simulation Protein Binding RNA-Binding Proteins
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circDeep: deep learning approach for circular RNA classification from other long non-coding RNA.

Bioinformatics (Oxford, England) Jan 1, 2020
MOTIVATION: Over the past two decades, a circular form of RNA (circular RNA), produced through alternative splicing, has become the focus of scientific studies due to its major role as a microRNA (miRNA) activity modulator and its association with va...
Computational Biology RNA, Long Noncoding RNA, Circular Reproducibility of Results Deep Learning
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[Methylation level of MEG3 and semen quality].

Zhonghua nan ke xue = National journal of andrology Nov 1, 2019
OBJECTIVE: To study the relationship between semen quality and the methylation level of maternally expressed gene 3 (MEG3) in sperm.
Sperm Motility RNA, Long Noncoding Genomic Imprinting Humans Male Methylation Semen Analysis CpG Islands Spermatozoa
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Uncovering the mouse olfactory long non-coding transcriptome with a novel machine-learning model.

DNA research : an international journal for rapid publication of reports on genes and genomes Aug 1, 2019
Very little is known about long non-coding RNAs (lncRNAs) in the mammalian olfactory sensory epithelia. Deciphering the non-coding transcriptome in olfaction is relevant because these RNAs have been shown to play a role in chromatin modification and ...
Female Animals Male Machine Learning RNA, Long Noncoding Olfactory Receptor Neurons Transcriptome Vomeronasal Organ Mice
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DeepCNPP: Deep Learning Architecture to Distinguish the Promoter of Human Long Non-Coding RNA Genes and Protein-Coding Genes.

Studies in health technology and informatics Jul 4, 2019
Promoter region of protein-coding genes are gradually being well understood, yet no comparable studies exist for the promoter of long non-coding RNA (lncRNA) genes which has emerged as a global potential regulator in multiple cellular process and dif...
Deep Learning Computational Biology Models, Theoretical Humans Machine Learning RNA, Long Noncoding Promoter Regions, Genetic
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[Effects of long non-coding RNA RP1-90L14.1 on the biological behaviors of cancer prostate LNCaP cells and its regulating mechanisms].

Zhonghua nan ke xue = National journal of andrology Mar 1, 2019
OBJECTIVE: To investigate the effects of long non-coding RNA RP1-90L14.1 on the proliferation, migration and invasion of prostate cancer LNCaP cells and the expressions of GRIN2A and BACE2.
Receptors, N-Methyl-D-Aspartate Gene Expression Regulation, Neoplastic Humans Male Cell Proliferation Transfection Neoplasm Invasiveness Cell Line, Tumor Cell Movement Amyloid Precursor Protein Secretases RNA, Long Noncoding Aspartic Acid Endopeptidases Prostatic Neoplasms
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Enrichment of Up-regulated and Down-regulated Gene Clusters Using Gene Ontology, miRNAs and lncRNAs in Colorectal Cancer.

Combinatorial chemistry & high throughput screening Jan 1, 2019
AIM AND OBJECTIVE: It is interesting to find the gene signatures of cancer stages based on the omics data. The aim of study was to evaluate and to enrich the array data using gene ontology and ncRNA databases in colorectal cancer.
Up-Regulation Databases, Genetic Gene Ontology MicroRNAs RNA, Long Noncoding Multigene Family High-Throughput Screening Assays Down-Regulation Humans Colorectal Neoplasms Gene Expression Profiling Gene Regulatory Networks
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Screening key lncRNAs for human lung adenocarcinoma based on machine learning and weighted gene co-expression network analysis.

Cancer biomarkers : section A of Disease markers Jan 1, 2019
BACKGROUND: Lung adenocarcinoma (LUAD) accounts for a significant proportion of lung cancer and there have been few diagnostic and therapeutic targets for LUAD due to the lack of specific biomarker. The aim of this study was to identify key long non-...
Male Gene Expression Profiling Gene Regulatory Networks RNA, Long Noncoding Adenocarcinoma of Lung Humans Machine Learning Female
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LncADeep: an ab initio lncRNA identification and functional annotation tool based on deep learning.

Bioinformatics (Oxford, England) Nov 15, 2018
MOTIVATION: To characterize long non-coding RNAs (lncRNAs), both identifying and functionally annotating them are essential to be addressed. Moreover, a comprehensive construction for lncRNA annotation is desired to facilitate the research in the fie...
Deep Learning Neural Networks, Computer RNA, Long Noncoding Molecular Sequence Annotation
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LncRNAnet: long non-coding RNA identification using deep learning.

Bioinformatics (Oxford, England) Nov 15, 2018
MOTIVATION: Long non-coding RNAs (lncRNAs) are important regulatory elements in biological processes. LncRNAs share similar sequence characteristics with messenger RNAs, but they play completely different roles, thus providing novel insights for biol...
Humans Deep Learning Databases, Genetic RNA, Long Noncoding High-Throughput Nucleotide Sequencing Open Reading Frames
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