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RNA, Long Noncoding

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SVM-LncRNAPro: An SVM-Based Method for Predicting Long Noncoding RNA Promoters.

IET systems biology
Long non-coding RNAs (lncRNAs) are closely associated with the regulation of gene expression, whose promoters play a crucial role in comprehensively understanding lncRNA regulatory mechanisms, functions and their roles in diseases. Due to limitations...

Structure-Based Prediction of lncRNA-Protein Interactions by Deep Learning.

Methods in molecular biology (Clifton, N.J.)
The interactions between long noncoding RNA (lncRNA) and protein play crucial roles in various biological processes. Computational methods are essential for predicting lncRNA-protein interactions and deciphering their mechanisms. In this chapter, we ...

Unveiling Long Non-coding RNA Networks from Single-Cell Omics Data Through Artificial Intelligence.

Methods in molecular biology (Clifton, N.J.)
Single-cell omics technologies have revolutionized the study of long non-coding RNAs (lncRNAs), offering unprecedented resolution in elucidating their expression dynamics, cell-type specificity, and associated gene regulatory networks (GRNs). Concurr...

[Screening of characteristic genes of salivary gland adenoid cystic carcinoma based on weighted co-expression network and machine learning].

Shanghai kou qiang yi xue = Shanghai journal of stomatology
PURPOSE: To identify potential biomarkers of salivary gland adenoid cystic carcinoma to further understand the potential pathogenesis of adenoid cystic carcinoma.

Introducing TEC-LncMir for prediction of lncRNA-miRNA interactions through deep learning of RNA sequences.

Briefings in bioinformatics
The interactions between long noncoding RNA (lncRNA) and microRNA (miRNA) play critical roles in life processes, highlighting the necessity to enhance the performance of state-of-the-art models. Here, we introduced TEC-LncMir, a novel approach for pr...

FunlncModel: integrating multi-omic features from upstream and downstream regulatory networks into a machine learning framework to identify functional lncRNAs.

Briefings in bioinformatics
Accumulating evidence indicates that long noncoding RNAs (lncRNAs) play important roles in molecular and cellular biology. Although many algorithms have been developed to reveal their associations with complex diseases by using downstream targets, th...

A comprehensive survey on deep learning-based identification and predicting the interaction mechanism of long non-coding RNAs.

Briefings in functional genomics
Long noncoding RNAs (lncRNAs) have been discovered to be extensively involved in eukaryotic epigenetic, transcriptional, and post-transcriptional regulatory processes with the advancements in sequencing technology and genomics research. Therefore, th...

Evolutionary learning-derived lncRNA signature with biomarker discovery for predicting stage of colon adenocarcinoma.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
In recent years, long non-coding RNAs (lncRNAs) have emerged as potential regulators of biological processes and genes, with the potential to serve as valuable biomarkers for cancer diagnosis and prognosis prediction. This work proposes an evolutiona...

HRGCNLDA: Forecasting of lncRNA-disease association based on hierarchical refinement graph convolutional neural network.

Mathematical biosciences and engineering : MBE
Long non-coding RNA (lncRNA) is considered to be a crucial regulator involved in various human biological processes, including the regulation of tumor immune checkpoint proteins. It has great potential as both a cancer biomolecular biomarker and ther...

Deqformer: high-definition and scalable deep learning probe design method.

Briefings in bioinformatics
Target enrichment sequencing techniques are gaining widespread use in the field of genomics, prized for their economic efficiency and swift processing times. However, their success depends on the performance of probes and the evenness of sequencing d...