AIMC Topic: RNA, Ribosomal, 16S
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Antimicrobial Characteristics of Lactic Acid Bacteria Isolated from Homemade Fermented Foods.
BioMed research international
Dec 30, 2018
. Lactic acid bacteria (LAB) were isolated from fermented foods, such as glutinous rice dough, corn noodle, chili sauce, potherb mustard pickles, and stinky tofu, in northeast China. LAB strains with antimicrobial activities were screened, and seven ...
Molecular phylogenetic investigations of Triops granarius (Lucas, 1864 (Branchiopoda: Notostraca) from the type locality of the former Apus orientalis Tiwari, 1952 and three other localities in the Western Ghats of India.
Zootaxa
Dec 14, 2018
We investigated the phylogenetic position of Triops granarius populations from four localities in the Western Ghats using partial sequences of three mitochondrial genes (COI, 12S rRNA and 16S rRNA) publicly available on the GenBank database. One of t...
The latitudinal gradient in rock-inhabiting bacterial community compositions in Victoria Land, Antarctica.
The Science of the total environment
Dec 6, 2018
The harsh conditions in Victoria Land, Antarctica have formed a simple ecosystem dominated by microbes that use rocks as shelters to avoid environmental stressors. The area is composed of basement rocks that illustrate the history of complex deformat...
Predicting oral malodour based on the microbiota in saliva samples using a deep learning approach.
BMC oral health
Jul 31, 2018
BACKGROUND: Oral malodour is mainly caused by volatile sulphur compounds produced by bacteria and bacterial interactions. It is difficult to predict the presence or absence of oral malodour based on the abundances of specific species and their combin...
Enrichment of thermophilic and mesophilic microbial consortia for efficient degradation of corn stalk.
Journal of environmental sciences (China)
Jul 29, 2018
Six different environmental samples were applied to enrich microbial consortia for efficient degradation of corn stalk, under the thermophilic and mesophilic conditions. The consortium obtained from anaerobic digested sludge under thermophilic condit...
Deep learning models for bacteria taxonomic classification of metagenomic data.
BMC bioinformatics
Jul 9, 2018
BACKGROUND: An open challenge in translational bioinformatics is the analysis of sequenced metagenomes from various environmental samples. Of course, several studies demonstrated the 16S ribosomal RNA could be considered as a barcode for bacteria cla...
SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare?
BMC genomics
Mar 14, 2017
BACKGROUND: A key step in microbiome sequencing analysis is read assignment to taxonomic units. This is often performed using one of four taxonomic classifications, namely SILVA, RDP, Greengenes or NCBI. It is unclear how similar these are and how to...
Biocontrol potential of Halotolerant bacterial chitinase from high yielding novel Bacillus Pumilus MCB-7 autochthonous to mangrove ecosystem.
Pesticide biochemistry and physiology
Sep 28, 2016
The multifaceted role of chitinase in medicine, agriculture, environmental remediation and various other industries greatly demands the isolation of high yielding chitinase producing microorganisms with improved properties. The current study aimed to...
Comparison of Boiling and Robotics Automation Method in DNA Extraction for Metagenomic Sequencing of Human Oral Microbes.
PloS one
Apr 22, 2016
The rapid improvement of next-generation sequencing performance now enables us to analyze huge sample sets with more than ten thousand specimens. However, DNA extraction can still be a limiting step in such metagenomic approaches. In this study, we a...
Effects of bovine subclinical mastitis caused by Corynebacterium spp. on somatic cell count, milk yield and composition by comparing contralateral quarters.
Veterinary journal (London, England : 1997)
Aug 11, 2015
Subclinical mastitis caused by Corynebacterium spp. (as a group and at the species level) was investigated by evaluating contralateral (healthy and infected) mammary quarters for somatic cell count (SCC), milk yield and composition. Selection of cows...
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