AIMC Topic: SARS-CoV-2

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The Infectious Disease Ontology in the age of COVID-19.

Journal of biomedical semantics
BACKGROUND: Effective response to public health emergencies, such as we are now experiencing with COVID-19, requires data sharing across multiple disciplines and data systems. Ontologies offer a powerful data sharing tool, and this holds especially f...

DeepEMhancer: a deep learning solution for cryo-EM volume post-processing.

Communications biology
Cryo-EM maps are valuable sources of information for protein structure modeling. However, due to the loss of contrast at high frequencies, they generally need to be post-processed to improve their interpretability. Most popular approaches, based on g...

Analysis of DNA Sequence Classification Using CNN and Hybrid Models.

Computational and mathematical methods in medicine
In a general computational context for biomedical data analysis, DNA sequence classification is a crucial challenge. Several machine learning techniques have used to complete this task in recent years successfully. Identification and classification o...

Deep learning for COVID-19 detection based on CT images.

Scientific reports
COVID-19 has tremendously impacted patients and medical systems globally. Computed tomography images can effectively complement the reverse transcription-polymerase chain reaction testing. This study adopted a convolutional neural network for COVID-1...

Machine learning application for the prediction of SARS-CoV-2 infection using blood tests and chest radiograph.

Scientific reports
Triaging and prioritising patients for RT-PCR test had been essential in the management of COVID-19 in resource-scarce countries. In this study, we applied machine learning (ML) to the task of detection of SARS-CoV-2 infection using basic laboratory ...

A human-computer collaboration for COVID-19 differentiation: combining a radiomics model with deep learning and human auditing.

Annals of palliative medicine
BACKGROUND: This study aimed to build a radiomics model with deep learning (DL) and human auditing and examine its diagnostic value in differentiating between coronavirus disease 2019 (COVID-19) and community-acquired pneumonia (CAP).

Optimizing COVID-19 vaccine distribution across the United States using deterministic and stochastic recurrent neural networks.

PloS one
Optimizing COVID-19 vaccine distribution can help plan around the limited production and distribution of vaccination, particularly in early stages. One of the main criteria for equitable vaccine distribution is predicting the geographic distribution ...

Exploring Feasibility of Multivariate Deep Learning Models in Predicting COVID-19 Epidemic.

Frontiers in public health
Mathematical models are powerful tools to study COVID-19. However, one fundamental challenge in current modeling approaches is the lack of accurate and comprehensive data. Complex epidemiological systems such as COVID-19 are especially challenging t...

Visual comprehension and orientation into the COVID-19 CIDO ontology.

Journal of biomedical informatics
The current intensive research on potential remedies and vaccinations for COVID-19 would greatly benefit from an ontology of standardized COVID terms. The Coronavirus Infectious Disease Ontology (CIDO) is the largest among several COVID ontologies, a...