AIMC Topic: Terminology as Topic

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MeSH-Informed Enrichment Analysis and MeSH-Guided Semantic Similarity Among Functional Terms and Gene Products in Chicken.

G3 (Bethesda, Md.) Aug 9, 2016
Biomedical vocabularies and ontologies aid in recapitulating biological knowledge. The annotation of gene products is mainly accelerated by Gene Ontology (GO), and more recently by Medical Subject Headings (MeSH). Here, we report a suite of MeSH pack...
Humans Animals Medical Subject Headings Terminology as Topic Vocabulary, Controlled Gene Ontology Chickens Databases, Genetic Semantics
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TaggerOne: joint named entity recognition and normalization with semi-Markov Models.

Bioinformatics (Oxford, England) Jun 9, 2016
MOTIVATION: Text mining is increasingly used to manage the accelerating pace of the biomedical literature. Many text mining applications depend on accurate named entity recognition (NER) and normalization (grounding). While high performing machine le...
Terminology as Topic Disease Information Storage and Retrieval Semantics Pattern Recognition, Automated Machine Learning Software Knowledge Bases Data Mining Forecasting Computational Biology
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Exploring information from the topology beneath the Gene Ontology terms to improve semantic similarity measures.

Gene Apr 12, 2016
Measuring the similarity between pairs of biological entities is important in molecular biology. The introduction of Gene Ontology (GO) provides us with a promising approach to quantifying the semantic similarity between two genes or gene products. T...
Gene Ontology Semantics Yeasts Terminology as Topic Humans Proteins Databases, Protein Algorithms Gene Expression Profiling
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A Knowledge-Based System for Display and Prediction of O-Glycosylation Network Behaviour in Response to Enzyme Knockouts.

PLoS computational biology Apr 7, 2016
O-linked glycosylation is an important post-translational modification of mucin-type protein, changes to which are important biomarkers of cancer. For this study of the enzymes of O-glycosylation, we developed a shorthand notation for representing Ga...
Humans Computer Simulation Animals CHO Cells Cricetulus Metabolic Networks and Pathways Models, Biological Computational Biology Glycosylation Protein Processing, Post-Translational Genetic Engineering Terminology as Topic Gene Knockout Techniques Glycosyltransferases Polysaccharides Knowledge Bases Mucins
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Interoperability between phenotypes in research and healthcare terminologies--Investigating partial mappings between HPO and SNOMED CT.

Journal of biomedical semantics Feb 9, 2016
BACKGROUND: Identifying partial mappings between two terminologies is of special importance when one terminology is finer-grained than the other, as is the case for the Human Phenotype Ontology (HPO), mainly used for research purposes, and SNOMED CT,...
Terminology as Topic Gene Ontology Phenotype Delivery of Health Care Systematized Nomenclature of Medicine Humans
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Adapting content-based image retrieval techniques for the semantic annotation of medical images.

Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society Feb 4, 2016
The automatic annotation of medical images is a prerequisite for building comprehensive semantic archives that can be used to enhance evidence-based diagnosis, physician education, and biomedical research. Annotation also has important applications i...
Radiographic Image Enhancement Database Management Systems Tomography, X-Ray Computed Reproducibility of Results Pattern Recognition, Automated Sensitivity and Specificity Data Mining Terminology as Topic Natural Language Processing Documentation Radiology Information Systems Radiographic Image Interpretation, Computer-Assisted Semantics Humans Imaging, Three-Dimensional Machine Learning Liver Algorithms
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ChemTok: A New Rule Based Tokenizer for Chemical Named Entity Recognition.

BioMed research international Jan 28, 2016
Named Entity Recognition (NER) from text constitutes the first step in many text mining applications. The most important preliminary step for NER systems using machine learning approaches is tokenization where raw text is segmented into tokens. This ...
Machine Learning Data Mining Software Chemical Phenomena Algorithms Terminology as Topic Support Vector Machine Natural Language Processing
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Classification of clinically useful sentences in clinical evidence resources.

Journal of biomedical informatics Jan 13, 2016
UNLABELLED: Most patient care questions raised by clinicians can be answered by online clinical knowledge resources. However, important barriers still challenge the use of these resources at the point of care.
Algorithms Language Decision Support Systems, Clinical Supervised Machine Learning Information Storage and Retrieval Natural Language Processing Bayes Theorem Humans Unified Medical Language System Semantics MEDLINE Terminology as Topic
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A Study of Neural Word Embeddings for Named Entity Recognition in Clinical Text.

AMIA ... Annual Symposium proceedings. AMIA Symposium Nov 5, 2015
Clinical Named Entity Recognition (NER) is a critical task for extracting important patient information from clinical text to support clinical and translational research. This study explored the neural word embeddings derived from a large unlabeled c...
Data Curation Semantics Humans Pattern Recognition, Automated Algorithms Terminology as Topic Natural Language Processing
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Practical applications for natural language processing in clinical research: The 2014 i2b2/UTHealth shared tasks.

Journal of biomedical informatics Oct 24, 2015
Vocabulary, Controlled Machine Learning Pattern Recognition, Automated Natural Language Processing Biomedical Research Terminology as Topic Electronic Health Records Information Storage and Retrieval Medical Record Linkage Narration
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