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Biomedical Research

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OSCI: standardized stem cell ontology representation and use cases for stem cell investigation.

BMC bioinformatics
BACKGROUND: Stem cells and stem cell lines are widely used in biomedical research. The Cell Ontology (CL) and Cell Line Ontology (CLO) are two community-based OBO Foundry ontologies in the domains of in vivo cells and in vitro cell line cells, respec...

The cell line ontology-based representation, integration and analysis of cell lines used in China.

BMC bioinformatics
BACKGROUND: The Chinese National Infrastructure of Cell Line stores and distributes cell lines for biomedical research in China. This study aims to represent and integrate the information of NICR cell lines into the community-based Cell Line Ontology...

A Roadmap for Foundational Research on Artificial Intelligence in Medical Imaging: From the 2018 NIH/RSNA/ACR/The Academy Workshop.

Radiology
Imaging research laboratories are rapidly creating machine learning systems that achieve expert human performance using open-source methods and tools. These artificial intelligence systems are being developed to improve medical image reconstruction, ...

Hierarchical sequence labeling for extracting BEL statements from biomedical literature.

BMC medical informatics and decision making
BACKGROUND: Extracting relations between bio-entities from biomedical literature is often a challenging task and also an essential step towards biomedical knowledge expansion. The BioCreative community has organized a shared task to evaluate the robu...

A two-site survey of medical center personnel's willingness to share clinical data for research: implications for reproducible health NLP research.

BMC medical informatics and decision making
BACKGROUND: A shareable repository of clinical notes is critical for advancing natural language processing (NLP) research, and therefore a goal of many NLP researchers is to create a shareable repository of clinical notes, that has breadth (from mult...

Parsing clinical text using the state-of-the-art deep learning based parsers: a systematic comparison.

BMC medical informatics and decision making
BACKGROUND: A shareable repository of clinical notes is critical for advancing natural language processing (NLP) research, and therefore a goal of many NLP researchers is to create a shareable repository of clinical notes, that has breadth (from mult...

QAnalysis: a question-answer driven analytic tool on knowledge graphs for leveraging electronic medical records for clinical research.

BMC medical informatics and decision making
BACKGROUND: While doctors should analyze a large amount of electronic medical record (EMR) data to conduct clinical research, the analyzing process requires information technology (IT) skills, which is difficult for most doctors in China.

Harnessing the Power of Machine Learning in Dementia Informatics Research: Issues, Opportunities, and Challenges.

IEEE reviews in biomedical engineering
Dementia is a chronic and degenerative condition affecting millions globally. The care of patients with dementia presents an ever-continuing challenge to healthcare systems in the 21st century. Medical and health sciences have generated unprecedented...

Knowledge Domain and Emerging Trends on Echinococcosis Research: A Scientometric Analysis.

International journal of environmental research and public health
The echinococcosis of humans and animals is a chronic helminthic disease caused by the larva of genus tapeworms. It is a globally distributed disease which is an important socioeconomic and public health problem in many low and middle-income countri...

Exploring semi-supervised variational autoencoders for biomedical relation extraction.

Methods (San Diego, Calif.)
The biomedical literature provides a rich source of knowledge such as protein-protein interactions (PPIs), drug-drug interactions (DDIs) and chemical-protein interactions (CPIs). Biomedical relation extraction aims to automatically extract biomedical...