AIMC Topic: Epigenesis, Genetic

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Machine learning for epigenetics and future medical applications.

Epigenetics
Understanding epigenetic processes holds immense promise for medical applications. Advances in Machine Learning (ML) are critical to realize this promise. Previous studies used epigenetic data sets associated with the germline transmission of epigene...

Identification of transcription factors that may reprogram lung adenocarcinoma.

Artificial intelligence in medicine
BACKGROUND: Lung adenocarcinoma is one of most threatening disease to human health. Although many efforts have been devoted to its genetic study, few researches have been focused on the transcription factors which regulate tumor initiation and progre...

Comprehensive analysis of epigenetically regulated genes in anergic T cells.

Cellular immunology
T cell anergy is one of the important mechanisms for immune tolerance. The results of many studies investigating the mechanism for T cell anergy induction have revealed that the expression of several genes was up-regulated in anergic T cells. It has ...

Gene expression classification using epigenetic features and DNA sequence composition in the human embryonic stem cell line H1.

Gene
Epigenetic factors are known to correlate with gene expression in the existing studies. However, quantitative models that accurately classify the highly and lowly expressed genes based on epigenetic factors are currently lacking. In this study, a new...

REGene: a literature-based knowledgebase of animal regeneration that bridge tissue regeneration and cancer.

Scientific reports
Regeneration is a common phenomenon across multiple animal phyla. Regeneration-related genes (REGs) are critical for fundamental cellular processes such as proliferation and differentiation. Identification of REGs and elucidating their functions may ...

A knowledgebase of the human Alu repetitive elements.

Journal of biomedical informatics
Alu elements are the most abundant retrotransposons in the human genome with more than one million copies. Alu repeats have been reported to participate in multiple processes related with genome regulation and compartmentalization. Moreover, they hav...

Bioinformatics insights into plant genomic imprinting: approaches, challenges, and future perspectives.

Briefings in functional genomics
Genomic imprinting is an epigenetic occurrence that results in the expression of alleles specific to the parent of origin, plays pivotal roles in plant development, stress adaptation, and agronomic trait regulation. While imprinting has been intensiv...

Comprehensive Analysis of Epigenetic Signatures in Non-Small Cell Lung Cancer: Development and Validation of an Epigenetics-Based Prognostic Model for Drug Sensitivity Prediction.

FASEB journal : official publication of the Federation of American Societies for Experimental Biology
Non-small cell lung cancer (NSCLC) exhibits complex epigenetic dysregulation that impacts treatment response and prognosis, yet comprehensive analysis linking epigenetic signatures to clinical outcomes remains limited. We integrated single-cell RNA s...

Deciphering the metabolic-epigenetic-immune crosstalk in Epstein-Barr virus-positive nasopharyngeal carcinoma: mechanisms and novel therapeutic frontiers.

International immunopharmacology
Epstein-Barr Virus (EBV) is the first tumor virus discovered in humans, which is closely related to the occurrence of a variety of malignant tumors, especially Nasopharyngeal Carcinoma (NPC). Epstein-Barr Virus (EBV)-associated NPC accounts for appro...