AIMC Topic: Genomics

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Skin Sensitization Testing-What's Next?

International journal of molecular sciences
There is an increasing demand for alternative in vitro methods to replace animal testing, and, to succeed, new methods are required to be at least as accurate as existing in vivo tests. However, skin sensitization is a complex process requiring coord...

A robust fuzzy rule based integrative feature selection strategy for gene expression data in TCGA.

BMC medical genomics
BACKGROUND: Lots of researches have been conducted in the selection of gene signatures that could distinguish the cancer patients from the normal. However, it is still an open question on how to extract the robust gene features.

Predicting drug response of tumors from integrated genomic profiles by deep neural networks.

BMC medical genomics
BACKGROUND: The study of high-throughput genomic profiles from a pharmacogenomics viewpoint has provided unprecedented insights into the oncogenic features modulating drug response. A recent study screened for the response of a thousand human cancer ...

Xrare: a machine learning method jointly modeling phenotypes and genetic evidence for rare disease diagnosis.

Genetics in medicine : official journal of the American College of Medical Genetics
PURPOSE: Despite the successful progress next-generation sequencing technologies has achieved in diagnosing the genetic cause of rare Mendelian diseases, the current diagnostic rate is still far from satisfactory because of heterogeneity, imprecision...

A Computational Framework for Genome-wide Characterization of the Human Disease Landscape.

Cell systems
A key challenge for the diagnosis and treatment of complex human diseases is identifying their molecular basis. Here, we developed a unified computational framework, URSA (Unveiling RNA Sample Annotation for Human Diseases), that leverages machine le...

Translating cancer genomics into precision medicine with artificial intelligence: applications, challenges and future perspectives.

Human genetics
In the field of cancer genomics, the broad availability of genetic information offered by next-generation sequencing technologies and rapid growth in biomedical publication has led to the advent of the big-data era. Integration of artificial intellig...

A Multi-Label Supervised Topic Model Conditioned on Arbitrary Features for Gene Function Prediction.

Genes
With the continuous accumulation of biological data, more and more machine learning algorithms have been introduced into the field of gene function prediction, which has great significance in decoding the secret of life. Recently, a multi-label super...

Using deep learning to identify translational research in genomic medicine beyond bench to bedside.

Database : the journal of biological databases and curation
Tracking scientific research publications on the evaluation, utility and implementation of genomic applications is critical for the translation of basic research to impact clinical and population health. In this work, we utilize state-of-the-art mach...

Annotation of gene product function from high-throughput studies using the Gene Ontology.

Database : the journal of biological databases and curation
High-throughput studies constitute an essential and valued source of information for researchers. However, high-throughput experimental workflows are often complex, with multiple data sets that may contain large numbers of false positives. The repres...