AIMC Topic: Machine Learning

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Medical Image Data and Datasets in the Era of Machine Learning-Whitepaper from the 2016 C-MIMI Meeting Dataset Session.

Journal of digital imaging
At the first annual Conference on Machine Intelligence in Medical Imaging (C-MIMI), held in September 2016, a conference session on medical image data and datasets for machine learning identified multiple issues. The common theme from attendees was t...

Automated EEG artifact elimination by applying machine learning algorithms to ICA-based features.

Journal of neural engineering
OBJECTIVE: Biological and non-biological artifacts cause severe problems when dealing with electroencephalogram (EEG) recordings. Independent component analysis (ICA) is a widely used method for eliminating various artifacts from recordings. However,...

Deep mining heterogeneous networks of biomedical linked data to predict novel drug-target associations.

Bioinformatics (Oxford, England)
MOTIVATION: A heterogeneous network topology possessing abundant interactions between biomedical entities has yet to be utilized in similarity-based methods for predicting drug-target associations based on the array of varying features of drugs and t...

NeBcon: protein contact map prediction using neural network training coupled with naïve Bayes classifiers.

Bioinformatics (Oxford, England)
MOTIVATION: Recent CASP experiments have witnessed exciting progress on folding large-size non-humongous proteins with the assistance of co-evolution based contact predictions. The success is however anecdotal due to the requirement of the contact pr...

Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification.

Bioinformatics (Oxford, England)
SUMMARY: State-of-the-art light and electron microscopes are capable of acquiring large image datasets, but quantitatively evaluating the data often involves manually annotating structures of interest. This process is time-consuming and often a major...

Toolkits and Libraries for Deep Learning.

Journal of digital imaging
Deep learning is an important new area of machine learning which encompasses a wide range of neural network architectures designed to complete various tasks. In the medical imaging domain, example tasks include organ segmentation, lesion detection, a...

Fully Automated Deep Learning System for Bone Age Assessment.

Journal of digital imaging
Skeletal maturity progresses through discrete phases, a fact that is used routinely in pediatrics where bone age assessments (BAAs) are compared to chronological age in the evaluation of endocrine and metabolic disorders. While central to many diseas...

Detection and Labeling of Vertebrae in MR Images Using Deep Learning with Clinical Annotations as Training Data.

Journal of digital imaging
The purpose of this study was to investigate the potential of using clinically provided spine label annotations stored in a single institution image archive as training data for deep learning-based vertebral detection and labeling pipelines. Lumbar a...

An evaluation of scanpath-comparison and machine-learning classification algorithms used to study the dynamics of analogy making.

Behavior research methods
In recent years, eyetracking has begun to be used to study the dynamics of analogy making. Numerous scanpath-comparison algorithms and machine-learning techniques are available that can be applied to the raw eyetracking data. We show how scanpath-com...

Identification of human flap endonuclease 1 (FEN1) inhibitors using a machine learning based consensus virtual screening.

Molecular bioSystems
Human Flap endonuclease1 (FEN1) is an enzyme that is indispensable for DNA replication and repair processes and inhibition of its Flap cleavage activity results in increased cellular sensitivity to DNA damaging agents (cisplatin, temozolomide, MMS, e...