AIMC Topic: Models, Statistical

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Comparison between random forest and gradient boosting machine methods for predicting Listeria spp. prevalence in the environment of pastured poultry farms.

Food research international (Ottawa, Ont.)
Foodborne pathogens such as Listeria spp. contain the ability to survive and multiply in poultry farming environments, which provides a route of contamination for poultry processing environments and final poultry products. An understanding of the eff...

Selene: a PyTorch-based deep learning library for sequence data.

Nature methods
To enable the application of deep learning in biology, we present Selene (https://selene.flatironinstitute.org/), a PyTorch-based deep learning library for fast and easy development, training, and application of deep learning model architectures for ...

Machine learning for patient risk stratification for acute respiratory distress syndrome.

PloS one
BACKGROUND: Existing prediction models for acute respiratory distress syndrome (ARDS) require manual chart abstraction and have only fair performance-limiting their suitability for driving clinical interventions. We sought to develop a machine learni...

Development of a machine learning algorithm predicting discharge placement after surgery for spondylolisthesis.

European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society
PURPOSE: We aimed to develop a machine learning algorithm that can accurately predict discharge placement in patients undergoing elective surgery for degenerative spondylolisthesis.

A deep learning approach to estimation of subject-level bias and variance in high angular resolution diffusion imaging.

Magnetic resonance imaging
The ability to evaluate empirical diffusion MRI acquisitions for quality and to correct the resulting imaging metrics allows for improved inference and increased replicability. Previous work has shown promise for estimation of bias and variance of ge...

Deep-learning augmented RNA-seq analysis of transcript splicing.

Nature methods
A major limitation of RNA sequencing (RNA-seq) analysis of alternative splicing is its reliance on high sequencing coverage. We report DARTS (https://github.com/Xinglab/DARTS), a computational framework that integrates deep-learning-based predictions...

A predictive model for the evaluation of flavor attributes of raw and cooked beef based on sensor array analyses.

Food research international (Ottawa, Ont.)
There are currently no standardized objective measures to evaluate beef flavor attributes, especially the comparison between raw beef and cooked beef. Beef flavor attribute is one of the most significant parameters for consumers. This study described...

Bayesian Networks for Risk Prediction Using Real-World Data: A Tool for Precision Medicine.

Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research
OBJECTIVE: The fields of medicine and public health are undergoing a data revolution. An increasing availability of data has brought about a growing interest in machine-learning algorithms. Our objective is to present the reader with an introduction ...

Convolutional neural network for cell classification using microscope images of intracellular actin networks.

PloS one
Automated cell classification is an important yet a challenging computer vision task with significant benefits to biomedicine. In recent years, there have been several studies attempted to build an artificial intelligence-based cell classifier using ...