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Mutation

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Impact of E484Q and L452R Mutations on Structure and Binding Behavior of SARS-CoV-2 B.1.617.1 Using Deep Learning AlphaFold2, Molecular Docking and Dynamics Simulation.

International journal of molecular sciences
During the outbreak of COVID-19, many SARS-CoV-2 variants presented key amino acid mutations that influenced their binding abilities with angiotensin-converting enzyme 2 (hACE2) and neutralizing antibodies. For the B.1.617 lineage, there had been fea...

High accuracy epidermal growth factor receptor mutation prediction via histopathological deep learning.

BMC pulmonary medicine
BACKGROUND: The detection of epidermal growth factor receptor (EGFR) mutations in patients with non-small cell lung cancer is critical for tyrosine kinase inhibitor therapy. EGFR detection requires tissue samples, which are difficult to obtain in som...

An enhanced grey wolf optimizer boosted machine learning prediction model for patient-flow prediction.

Computers in biology and medicine
Large and medium-sized general hospitals have adopted artificial intelligence big data systems to optimize the management of medical resources to improve the quality of hospital outpatient services and decrease patient wait times in recent years as a...

Plasma Exosome Analysis for Protein Mutation Identification Using a Combination of Raman Spectroscopy and Deep Learning.

ACS sensors
Protein mutation detection using liquid biopsy can be simply performed periodically, making it easy to detect the occurrence of newly emerging mutations rapidly. However, it has low diagnostic accuracy since there are more normal proteins than mutate...

Harnessing deep learning into hidden mutations of neurological disorders for therapeutic challenges.

Archives of pharmacal research
The relevant study of transcriptome-wide variations and neurological disorders in the evolved field of genomic data science is on the rise. Deep learning has been highlighted utilizing algorithms on massive amounts of data in a human-like manner, and...

Deep learning model accurately classifies metastatic tumors from primary tumors based on mutational signatures.

Scientific reports
Metastatic propagation is the leading cause of death for most cancers. Prediction and elucidation of metastatic process is crucial for the treatment of cancer. Even though somatic mutations have been linked to tumorigenesis and metastasis, it is less...

Biologically Interpretable Deep Learning To Predict Response to Immunotherapy In Advanced Melanoma Using Mutations and Copy Number Variations.

Journal of immunotherapy (Hagerstown, Md. : 1997)
Only 30-40% of advanced melanoma patients respond effectively to immunotherapy in clinical practice, so it is necessary to accurately identify the response of patients to immunotherapy pre-clinically. Here, we develop KP-NET, a deep learning model th...

CoVEffect: interactive system for mining the effects of SARS-CoV-2 mutations and variants based on deep learning.

GigaScience
BACKGROUND: Literature about SARS-CoV-2 widely discusses the effects of variations that have spread in the past 3 years. Such information is dispersed in the texts of several research articles, hindering the possibility of practically integrating it ...

PM2.5 concentration prediction using weighted CEEMDAN and improved LSTM neural network.

Environmental science and pollution research international
As the core of pollution prevention and management, accurate PM2.5 concentration prediction is crucial for human survival. However, due to the nonstationarity and nonlinearity of PM2.5 concentration data, the accurate prediction for PM2.5 concentrati...