AIMC Topic: Plant Proteins
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MultiRepPI: a cross-modal feature fusion-based multiple characterization framework for plant peptide-protein interaction prediction.
BMC plant biology
Jul 19, 2025
Plant peptide-protein interactions (PepPI) play a crucial role in plant growth, development, immune regulation, and environmental adaptation. However, existing computational methods still face several challenges in PepPI prediction. First, most metho...
Analysis of Protein-Protein Interactions in CC125 by Co-Fractionation Mass Spectrometry.
Journal of proteome research
Jul 11, 2025
, a unicellular eukaryotic green alga, is an important biological model. Previous studies on protein complexes in have primarily focused on photosynthesis and ciliary movement, while understanding the overall protein complex network is still limited...
Structure and Functions of NDR1/HIN1-Like (NHL) Proteins in Plant Development and Response to Environmental Stresses.
Plant, cell & environment
Apr 21, 2025
The NON-RACE-SPECIFIC DISEASE RESISTANCE 1/harpin-induced 1-LIKE (NHL) gene family plays pivotal roles, including pathogen resistance, abiotic stress tolerance, and developmental regulation, underscoring their functional versatility in developmental ...
Grain protein function prediction based on improved FCN and bidirectional LSTM.
Food chemistry
Apr 4, 2025
With the development of high-throughput sequencing technologies, predicting grain protein function from amino acid sequences based on intelligent model has become one of the significant tasks in bioinformatics. The soybean, maize, indica, and japonic...
Deep Neural Network-Mining of Rice Drought-Responsive TF-TAG Modules by a Combinatorial Analysis of ATAC-Seq and RNA-Seq.
Plant, cell & environment
Mar 31, 2025
Drought is a critical risk factor that impacts rice growth and yields. Previous studies have focused on the regulatory roles of individual transcription factors in response to drought stress. However, there is limited understanding of multi-factor st...
Machine learning-driven discovery of bioactive peptides from duckweed (Lemnaceae) protein hydrolysates: Identification and experimental validation of 20 novel antihypertensive, antidiabetic, and/or antioxidant peptides.
Food chemistry
Mar 28, 2025
Duckweed, a sustainable, protein-rich aquatic plant, has recently emerged as a promising source of bioactive peptides. However, their identification remains limited and challenging in such complex mixtures. Following duckweed hydrolysis with pepsin, ...
Compositional analysis of alternative protein blends using near and mid-infrared spectroscopy coupled with conventional and machine learning algorithms.
Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy
Mar 25, 2025
The non-invasive real-time analysis of the composition of alternative, plant-based protein sources is important to control high moisture extrusion processes and ensure the quality and texture of the final extrudates used in the elaboration of meat an...
PlantPathoPPI: An Ensemble-based Machine Learning Architecture for Prediction of Protein-Protein Interactions between Plants and Pathogens.
Journal of molecular biology
Mar 17, 2025
This study aimed to develop a machine learning-based tool for predicting protein-protein interactions (PPIs) between plant-pathogen systems, addressing the challenges of experimental PPI identification. Identifying PPIs in plant-pathogen interactions...
Light spectrum mediated improved graft-healing response by enhanced expression of transport protein in vegetables under drought conditions.
Plant physiology and biochemistry : PPB
Mar 12, 2025
Vegetable production faces unprecedented challenges due to a rapid change in climate. Among several challenges increased stress factors like drought, salinity, and temperature threaten overall vegetable production. Grafting, a well-established techni...
Endogenous storage proteins influence Rice flavor: Insights from protein-flavor correlations and predictive modeling.
Food chemistry
Mar 5, 2025
This study investigated the correlation between endogenous storage proteins and aromatic compounds in rice, and their collective influence on rice eating quality. Six rice samples, varying in four endogenous storage proteins through gene editing gene...
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