AIMC Topic: Software

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Facial recognition accuracy in photographs of Thai neonates with Down syndrome among physicians and the Face2Gene application.

American journal of medical genetics. Part A
Down syndrome (DS) is typically recognizable in those who present with multiple dysmorphism, especially in regard to facial phenotypes. However, as the presentation of DS in neonates is less obvious, a phenotype-based presumptive diagnosis is more ch...

PHOTONAI-A Python API for rapid machine learning model development.

PloS one
PHOTONAI is a high-level Python API designed to simplify and accelerate machine learning model development. It functions as a unifying framework allowing the user to easily access and combine algorithms from different toolboxes into custom algorithm ...

Accurate plant pathogen effector protein classification ab initio with deepredeff: an ensemble of convolutional neural networks.

BMC bioinformatics
BACKGROUND: Plant pathogens cause billions of dollars of crop loss every year and are a major threat to global food security. Effector proteins are the tools such pathogens use to infect the cell, predicting effectors de novo from sequence is difficu...

PyRMD: A New Fully Automated AI-Powered Ligand-Based Virtual Screening Tool.

Journal of chemical information and modeling
Artificial intelligence (AI) algorithms are dramatically redefining the current drug discovery landscape by boosting the efficiency of its various steps. Still, their implementation often requires a certain level of expertise in AI paradigms and codi...

Prioritizing and characterizing functionally relevant genes across human tissues.

PLoS computational biology
Knowledge of genes that are critical to a tissue's function remains difficult to ascertain and presents a major bottleneck toward a mechanistic understanding of genotype-phenotype links. Here, we present the first machine learning model-FUGUE-combini...

DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data.

Genome medicine
Multi-omics data are good resources for prognosis and survival prediction; however, these are difficult to integrate computationally. We introduce DeepProg, a novel ensemble framework of deep-learning and machine-learning approaches that robustly pre...

SidechainNet: An all-atom protein structure dataset for machine learning.

Proteins
Despite recent advancements in deep learning methods for protein structure prediction and representation, little focus has been directed at the simultaneous inclusion and prediction of protein backbone and sidechain structure information. We present ...

3D deformable registration of longitudinal abdominopelvic CT images using unsupervised deep learning.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVES: Deep learning is being increasingly used for deformable image registration and unsupervised approaches, in particular, have shown great potential. However, the registration of abdominopelvic Computed Tomography (CT) images ...

Computer-assisted surgery in medical and dental applications.

Expert review of medical devices
INTRODUCTION: Computer-assisted surgery (CAS) is a broad surgical methodology that utilizes computer technology to both plan and execute surgical intervention. CAS is widespread in both medicine and dentistry as it allows for minimally invasive and p...

Gene Position Index Mutation Detection Algorithm Based on Feedback Fast Learning Neural Network.

Computational intelligence and neuroscience
In the detection of genome variation, the research on the internal correlation of reference genome is deepening; the detection of variation in genome sequence has become the focus of research, and it has also become an effective path to find new gene...