AIMC Topic: Software

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[Trends of development in CT and MRI doagnostics].

Magyar onkologia
Modern imaging processes, with CT and MRI diagnostics among them, play an increasingly important role in the early diagnosis and determination of the extent and nature of illnesses and the evaluation of their response to therapy. The authors review t...

Machine learning approaches for analyzing and enhancing molecular dynamics simulations.

Current opinion in structural biology
Molecular dynamics (MD) has become a powerful tool for studying biophysical systems, due to increasing computational power and availability of software. Although MD has made many contributions to better understanding these complex biophysical systems...

Stochastic rounding and reduced-precision fixed-point arithmetic for solving neural ordinary differential equations.

Philosophical transactions. Series A, Mathematical, physical, and engineering sciences
Although double-precision floating-point arithmetic currently dominates high-performance computing, there is increasing interest in smaller and simpler arithmetic types. The main reasons are potential improvements in energy efficiency and memory foot...

Improved protein structure prediction using potentials from deep learning.

Nature
Protein structure prediction can be used to determine the three-dimensional shape of a protein from its amino acid sequence. This problem is of fundamental importance as the structure of a protein largely determines its function; however, protein str...

Deep learning, computer-aided radiography reading for tuberculosis: a diagnostic accuracy study from a tertiary hospital in India.

Scientific reports
In general, chest radiographs (CXR) have high sensitivity and moderate specificity for active pulmonary tuberculosis (PTB) screening when interpreted by human readers. However, they are challenging to scale due to hardware costs and the dearth of pro...

Transfer Learning in ECG Classification from Human to Horse Using a Novel Parallel Neural Network Architecture.

Scientific reports
Automatic or semi-automatic analysis of the equine electrocardiogram (eECG) is currently not possible because human or small animal ECG analysis software is unreliable due to a different ECG morphology in horses resulting from a different cardiac inn...

VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning.

PLoS computational biology
Antimicrobial resistance (AMR) is an increasing threat to public health. Current methods of determining AMR rely on inefficient phenotypic approaches, and there remains incomplete understanding of AMR mechanisms for many pathogen-antimicrobial combin...

Automatic detection of perforators for microsurgical reconstruction.

Breast (Edinburgh, Scotland)
The deep inferior epigastric perforator (DIEP) is the most commonly used free flap in mastectomy reconstruction. Preoperative imaging techniques are routinely used to detect location, diameter and course of perforators, with direct intervention from ...

ProDCoNN: Protein design using a convolutional neural network.

Proteins
Designing protein sequences that fold to a given three-dimensional (3D) structure has long been a challenging problem in computational structural biology with significant theoretical and practical implications. In this study, we first formulated this...