AIMC Topic: Software

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EK-DRD: A Comprehensive Database for Drug Repositioning Inspired by Experimental Knowledge.

Journal of chemical information and modeling
Drug repositioning, or the identification of new indications for approved therapeutic drugs, has gained substantial traction with both academics and pharmaceutical companies because it reduces the cost and duration of the drug development pipeline an...

Hierarchical gated recurrent neural network with adversarial and virtual adversarial training on text classification.

Neural networks : the official journal of the International Neural Network Society
Document classification aims to assign one or more classes to a document for ease of management by understanding the content of a document. Hierarchical attention network (HAN) has been showed effective to classify documents that are ambiguous. HAN p...

Technical Note: PYRO-NN: Python reconstruction operators in neural networks.

Medical physics
PURPOSE: Recently, several attempts were conducted to transfer deep learning to medical image reconstruction. An increasingly number of publications follow the concept of embedding the computed tomography (CT) reconstruction as a known operator into ...

Homology analysis of malware based on ensemble learning and multifeatures.

PloS one
With the exponential increase in malware, homology analysis has become a hot research topic in the malware detection field. This paper proposes MHAS, a malware homology analysis system based on ensemble learning and multifeatures. MHAS generates gray...

The What-If Tool: Interactive Probing of Machine Learning Models.

IEEE transactions on visualization and computer graphics
A key challenge in developing and deploying Machine Learning (ML) systems is understanding their performance across a wide range of inputs. To address this challenge, we created the What-If Tool, an open-source application that allows practitioners t...

Identification of prokaryotic promoters and their strength by integrating heterogeneous features.

Genomics
The promoter is a regulatory DNA region and important for gene transcriptional regulation. It is located near the transcription start site (TSS) upstream of the corresponding gene. In the post-genomics era, the availability of data makes it possible ...

Predicting the acute ecotoxicity of chemical substances by machine learning using graph theory.

Chemosphere
Accurate in silico predictions of chemical substance ecotoxicity has become an important issue in recent years. Most conventional methods, such as the Ecological Structure-Activity Relationship (ECOSAR) model, cluster chemical substances empirically ...

Closed-loop cycles of experiment design, execution, and learning accelerate systems biology model development in yeast.

Proceedings of the National Academy of Sciences of the United States of America
One of the most challenging tasks in modern science is the development of systems biology models: Existing models are often very complex but generally have low predictive performance. The construction of high-fidelity models will require hundreds/tho...

An interpretable natural language processing system for written medical examination assessment.

Journal of biomedical informatics
OBJECTIVE: The assessment of written medical examinations is a tedious and expensive process, requiring significant amounts of time from medical experts. Our objective was to develop a natural language processing (NLP) system that can expedite the as...

A Heuristic Approach to Overcome Architectural Barriers Using a Robotic Wheelchair.

IEEE transactions on neural systems and rehabilitation engineering : a publication of the IEEE Engineering in Medicine and Biology Society
The Mobility Enhancement roBotic (MEBot) wheelchair was developed to improve the safety and accessibility of wheelchair users when facing architectural barriers. MEBot uses pneumatic actuators attached to its frame and six wheels to provide curb asce...