AIMC Topic: Software
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Ease of adoption of clinical natural language processing software: An evaluation of five systems.
Journal of biomedical informatics
Jul 22, 2015
OBJECTIVE: In recognition of potential barriers that may inhibit the widespread adoption of biomedical software, the 2014 i2b2 Challenge introduced a special track, Track 3 - Software Usability Assessment, in order to develop a better understanding o...
Challenges in clinical natural language processing for automated disorder normalization.
Journal of biomedical informatics
Jul 14, 2015
BACKGROUND: Identifying key variables such as disorders within the clinical narratives in electronic health records has wide-ranging applications within clinical practice and biomedical research. Previous research has demonstrated reduced performance...
ProCon - PROteomics CONversion tool.
Journal of proteomics
Jul 13, 2015
With the growing amount of experimental data produced in proteomics experiments and the requirements/recommendations of journals in the proteomics field to publicly make available data described in papers, a need for long-term storage of proteomics d...
Towards a Food Safety Knowledge Base Applicable in Crisis Situations and Beyond.
BioMed research international
Jul 13, 2015
In case of contamination in the food chain, fast action is required in order to reduce the numbers of affected people. In such situations, being able to predict the fate of agents in foods would help risk assessors and decision makers in assessing th...
Detection and categorization of bacteria habitats using shallow linguistic analysis.
BMC bioinformatics
Jul 13, 2015
BACKGROUND: Information regarding bacteria biotopes is important for several research areas including health sciences, microbiology, and food processing and preservation. One of the challenges for scientists in these domains is the huge amount of inf...
Searching for optimal setting conditions in technological processes using parametric estimation models and neural network mapping approach: a tutorial.
Analytica chimica acta
Jul 9, 2015
Engineering optimization is an actual goal in manufacturing and service industries. In the tutorial we represented the concept of traditional parametric estimation models (Factorial Design (FD) and Central Composite Design (CCD)) for searching optima...
SPECTRUS: A Dimensionality Reduction Approach for Identifying Dynamical Domains in Protein Complexes from Limited Structural Datasets.
Structure (London, England : 1993)
Jul 9, 2015
Identifying dynamical, quasi-rigid domains in proteins provides a powerful means for characterizing functionally oriented structural changes via a parsimonious set of degrees of freedom. In fact, the relative displacements of few dynamical domains us...
Automated generation of directed graphs from vascular segmentations.
Journal of biomedical informatics
Jul 9, 2015
Automated feature extraction from medical images is an important task in imaging informatics. We describe a graph-based technique for automatically identifying vascular substructures within a vascular tree segmentation. We illustrate our technique us...
An efficiency analysis of high-order combinations of gene-gene interactions using multifactor-dimensionality reduction.
BMC genomics
Jul 1, 2015
BACKGROUND: Multifactor dimensionality reduction (MDR) is widely used to analyze interactions of genes to determine the complex relationship between diseases and polymorphisms in humans. However, the astronomical number of high-order combinations mak...
Watching from a distance: A robotically controlled laser and real-time subject tracking software for the study of conditioned predator/prey-like interactions.
Journal of neuroscience methods
Jun 22, 2015
BACKGROUND: The physical distance between predator and prey is a primary determinant of behavior, yet few paradigms exist to study this reliably in rodents.
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