AIMC Topic: Bacteria

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Computing within bacteria: Programming of bacterial behavior by means of a plasmid encoding a perceptron neural network.

Bio Systems Jan 19, 2022
In nature, bacteria exhibit a limited repertoire of behaviors in response to environmental changes. Synthetic biology has now opened up the possibility of programming cells or unicellular organisms in order to enable them to perform certain tasks, wh...
Neural Networks, Computer Bacteria Plasmids Biotechnology Synthetic Biology Humans
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DeLTA 2.0: A deep learning pipeline for quantifying single-cell spatial and temporal dynamics.

PLoS computational biology Jan 18, 2022
Improvements in microscopy software and hardware have dramatically increased the pace of image acquisition, making analysis a major bottleneck in generating quantitative, single-cell data. Although tools for segmenting and tracking bacteria within ti...
Single-Cell Analysis Image Processing, Computer-Assisted Software Deep Learning Microscopy Time-Lapse Imaging Bacteria Computational Biology
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Scale-Adaptive Deep Model for Bacterial Raman Spectra Identification.

IEEE journal of biomedical and health informatics Jan 17, 2022
The combination of Raman spectroscopy and deep learning technology provides an automatic, rapid, and accurate scheme for the clinical diagnosis of pathogenic bacteria. However, the accuracy of existing deep learning methods is still limited because o...
Neural Networks, Computer Bacteria Spectrum Analysis, Raman Humans
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High-Speed Diagnosis of Bacterial Pathogens at the Single Cell Level by Raman Microspectroscopy with Machine Learning Filters and Denoising Autoencoders.

ACS chemical biology Jan 13, 2022
Accurate and rapid identification of infectious bacteria is important in medicine. Raman microspectroscopy holds great promise in performing label-free identification at the single-cell level. However, due to the naturally weak Raman signal, it is a ...
Machine Learning Spectrum Analysis, Raman Bacteria
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A new method for detecting mixed bacteria based on multi-wavelength transmission spectroscopy technology.

Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy Jan 5, 2022
Previously, we successfully realized the identification of a single species of bacteria based on the multi-wavelength transmission spectrum of bacteria. The current research is focused on realizing the spectral analysis of mixed bacteria. Principal c...
Neural Networks, Computer Principal Component Analysis Technology Spectrum Analysis Bacteria
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OperonSEQer: A set of machine-learning algorithms with threshold voting for detection of operon pairs using short-read RNA-sequencing data.

PLoS computational biology Jan 5, 2022
Operon prediction in prokaryotes is critical not only for understanding the regulation of endogenous gene expression, but also for exogenous targeting of genes using newly developed tools such as CRISPR-based gene modulation. A number of methods have...
Sequence Analysis, RNA Operon Bacteria Computational Biology RNA, Bacterial Machine Learning Algorithms
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sRNARFTarget: a fast machine-learning-based approach for transcriptome-wide sRNA target prediction.

RNA biology Dec 31, 2021
Bacterial small regulatory RNAs (sRNAs) are key regulators of gene expression in many processes related to adaptive responses. A multitude of sRNAs have been identified in many bacterial species; however, their function has yet to be elucidated. A ke...
Web Browser RNA, Bacterial RNA, Small Untranslated Transcriptome Bacteria RNA, Messenger Databases, Genetic Computational Biology Software Gene Expression Profiling Machine Learning
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NGS read classification using AI.

PloS one Dec 22, 2021
Clinical metagenomics is a powerful diagnostic tool, as it offers an open view into all DNA in a patient's sample. This allows the detection of pathogens that would slip through the cracks of classical specific assays. However, due to this unspecific...
Viruses Metagenome High-Throughput Nucleotide Sequencing Neural Networks, Computer Metagenomics Algorithms Humans DNA, Bacterial Animals DNA, Viral Bacteria DNA
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Biomimetic sharkskin surfaces with antibacterial, cytocompatible, and drug delivery properties.

Biomaterials advances Nov 27, 2021
Fighting with the infection is one of the most challenging and costly burdens of the healthcare system. Several types of antibiotics and antibacterial agents have been designed and used in combating this dilemma. Nevertheless, the overuse of drugs an...
Biomimetics Bacteria Animals Chitosan Biofilms Humans Mammals Anti-Bacterial Agents Biocompatible Materials
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A Bio-inspired trajectory planning method for robotic manipulators based on improved bacteria foraging optimization algorithm and tau theory.

Mathematical biosciences and engineering : MBE Nov 18, 2021
In this paper, a novel bio-inspired trajectory planning method is proposed for robotic systems based on an improved bacteria foraging optimization algorithm (IBFOA) and an improved intrinsic Tau jerk (named Tau-J*) guidance strategy. Besides, the ada...
Algorithms Computer Simulation Models, Theoretical Robotics Bacteria Biomimetics
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