AI Medical Compendium Topic

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Data Mining

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Extracting lung cancer staging descriptors from pathology reports: A generative language model approach.

Journal of biomedical informatics
BACKGROUND: In oncology, electronic health records contain textual key information for the diagnosis, staging, and treatment planning of patients with cancer. However, text data processing requires a lot of time and effort, which limits the utilizati...

Prediction of mortality events of patients with acute heart failure in intensive care unit based on deep neural network.

Computer methods and programs in biomedicine
BACKGROUND: Acute heart failure (AHF) in the intensive care unit (ICU) is characterized by its criticality, rapid progression, complex and changeable condition, and its pathophysiological process involves the interaction of multiple organs and system...

SSGU-CD: A combined semantic and structural information graph U-shaped network for document-level Chemical-Disease interaction extraction.

Journal of biomedical informatics
Document-level interaction extraction for Chemical-Disease is aimed at inferring the interaction relations between chemical entities and disease entities across multiple sentences. Compared with sentence-level relation extraction, document-level rela...

Integrating graph convolutional networks to enhance prompt learning for biomedical relation extraction.

Journal of biomedical informatics
BACKGROUND AND OBJECTIVE: Biomedical relation extraction aims to reveal the relation between entities in medical texts. Currently, the relation extraction models that have attracted much attention are mainly to fine-tune the pre-trained language mode...

CMCN: Chinese medical concept normalization using continual learning and knowledge-enhanced.

Artificial intelligence in medicine
Medical Concept Normalization (MCN) is a crucial process for deep information extraction and natural language processing tasks, which plays a vital role in biomedical research. Although MCN in English has achieved significant research achievements, C...

Advancing Chinese biomedical text mining with community challenges.

Journal of biomedical informatics
OBJECTIVE: This study aims to review the recent advances in community challenges for biomedical text mining in China.

Optimizing biomedical information retrieval with a keyword frequency-driven prompt enhancement strategy.

BMC bioinformatics
BACKGROUND: Mining the vast pool of biomedical literature to extract accurate responses and relevant references is challenging due to the domain's interdisciplinary nature, specialized jargon, and continuous evolution. Early natural language processi...

Artificial intelligence-based data extraction for next generation risk assessment: Is fine-tuning of a large language model worth the effort?

Toxicology
To underpin scientific evaluations of chemical risks, agencies such as the European Food Safety Authority (EFSA) heavily rely on the outcome of systematic reviews, which currently require extensive manual effort. One specific challenge constitutes th...

VAIV bio-discovery service using transformer model and retrieval augmented generation.

BMC bioinformatics
BACKGROUND: There has been a considerable advancement in AI technologies like LLM and machine learning to support biomedical knowledge discovery.