AIMC Topic: Databases, Factual

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Aber-OWL: a framework for ontology-based data access in biology.

BMC bioinformatics
BACKGROUND: Many ontologies have been developed in biology and these ontologies increasingly contain large volumes of formalized knowledge commonly expressed in the Web Ontology Language (OWL). Computational access to the knowledge contained within t...

Biomedical question answering using semantic relations.

BMC bioinformatics
BACKGROUND: The proliferation of the scientific literature in the field of biomedicine makes it difficult to keep abreast of current knowledge, even for domain experts. While general Web search engines and specialized information retrieval (IR) syste...

Ontology-based data integration between clinical and research systems.

PloS one
Data from the electronic medical record comprise numerous structured but uncoded elements, which are not linked to standard terminologies. Reuse of such data for secondary research purposes has gained in importance recently. However, the identificati...

Embedding assisted prediction architecture for event trigger identification.

Journal of bioinformatics and computational biology
Molecular events normally have significant meanings since they describe important biological interactions or alternations such as binding of a protein. As a crucial step of biological event extraction, event trigger identification has attracted much ...

(Q)SAR assessments of potentially mutagenic impurities: a regulatory perspective on the utility of expert knowledge and data submission.

Regulatory toxicology and pharmacology : RTP
(Quantitative) structure activity relationship [(Q)SAR] modeling is the primary tool used to evaluate the mutagenic potential associated with drug impurities. General recommendations regarding the use of (Q)SAR in regulatory decision making have rece...

LinkRbrain: multi-scale data integrator of the brain.

Journal of neuroscience methods
BACKGROUND: LinkRbrain is an open-access web platform for multi-scale data integration and visualization of human brain data. This platform integrates anatomical, functional, and genetic knowledge produced by the scientific community.

African-American Men with Low-Risk Prostate Cancer: Modern Treatment and Outcome Trends.

Journal of racial and ethnic health disparities
OBJECTIVE: To investigate the clinical characteristics and treatment patterns for African-American (AA) men with low-risk prostate cancer (PCa) using a national, population-based dataset.

Improving the Mann-Whitney statistical test for feature selection: an approach in breast cancer diagnosis on mammography.

Artificial intelligence in medicine
OBJECTIVE: This work addresses the theoretical description and experimental evaluation of a new feature selection method (named uFilter). The uFilter improves the Mann-Whitney U-test for reducing dimensionality and ranking features in binary classifi...

Outcomes of Extraperitoneal Robot-Assisted Radical Prostatectomy in the Morbidly Obese: A Propensity Score-Matched Study.

Journal of endourology
INTRODUCTION: An increasing number of obese patients (body mass index [BMI] >30 kg/m(2)]) with localized prostate cancer are presenting as candidates for robot-assisted radical prostatectomy (RARP), which can be carried out using the transperitoneal ...

Secondary use of electronic health records for building cohort studies through top-down information extraction.

Journal of biomedical informatics
Controlled clinical trials are usually supported with an in-front data aggregation system, which supports the storage of relevant information according to the trial context within a highly structured environment. In contrast to the documentation of c...