AIMC Topic: Datasets as Topic

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GRYFUN: a web application for GO term annotation visualization and analysis in protein sets.

PloS one
Functional context for biological sequence is provided in the form of annotations. However, within a group of similar sequences there can be annotation heterogeneity in terms of coverage and specificity. This in turn can introduce issues regarding th...

An ensemble method with hybrid features to identify extracellular matrix proteins.

PloS one
The extracellular matrix (ECM) is a dynamic composite of secreted proteins that play important roles in numerous biological processes such as tissue morphogenesis, differentiation and homeostasis. Furthermore, various diseases are caused by the dysfu...

Predictive modelling of survival and length of stay in critically ill patients using sequential organ failure scores.

Artificial intelligence in medicine
INTRODUCTION: The length of stay of critically ill patients in the intensive care unit (ICU) is an indication of patient ICU resource usage and varies considerably. Planning of postoperative ICU admissions is important as ICUs often have no nonoccupi...

Analysis of underlying causes of inter-expert disagreement in retinopathy of prematurity diagnosis. Application of machine learning principles.

Methods of information in medicine
OBJECTIVE: Inter-expert variability in image-based clinical diagnosis has been demonstrated in many diseases including retinopathy of prematurity (ROP), which is a disease affecting low birth weight infants and is a major cause of childhood blindness...

BiobankConnect: software to rapidly connect data elements for pooled analysis across biobanks using ontological and lexical indexing.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Pooling data across biobanks is necessary to increase statistical power, reveal more subtle associations, and synergize the value of data sources. However, searching for desired data elements among the thousands of available elements and h...

Protein submitochondrial localization from integrated sequence representation and SVM-based backward feature extraction.

Molecular bioSystems
Mitochondrion, a tiny energy factory, plays an important role in various biological processes of most eukaryotic cells. Mitochondrial defection is associated with a series of human diseases. Knowledge of the submitochondrial locations of proteins can...

Quantifying care coordination using natural language processing and domain-specific ontology.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: This research identifies specific care coordination activities used by Aging in Place (AIP) nurse care coordinators and home healthcare (HHC) nurses when coordinating care for older community-dwelling adults and suggests a method to quanti...

Evaluating the state of the art in disorder recognition and normalization of the clinical narrative.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: The ShARe/CLEF eHealth 2013 Evaluation Lab Task 1 was organized to evaluate the state of the art on the clinical text in (i) disorder mention identification/recognition based on Unified Medical Language System (UMLS) definition (Task 1a) a...

HBUED: An EEG dataset for emotion recognition.

Journal of affective disorders
Emotion recognition via electroencephalogram (EEG) data is crucial for improving human-computer interaction. In practice, researchers require a substantial quantity of EEG samples to train and validate models. However, existing EEG datasets typically...