AIMC Topic: Deep Learning

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A Deep Learning Mammography-based Model for Improved Breast Cancer Risk Prediction.

Radiology
Background Mammographic density improves the accuracy of breast cancer risk models. However, the use of breast density is limited by subjective assessment, variation across radiologists, and restricted data. A mammography-based deep learning (DL) mod...

New Deep Learning Genomic-Based Prediction Model for Multiple Traits with Binary, Ordinal, and Continuous Phenotypes.

G3 (Bethesda, Md.)
Multiple-trait experiments with mixed phenotypes (binary, ordinal and continuous) are not rare in animal and plant breeding programs. However, there is a lack of statistical models that can exploit the correlation between traits with mixed phenotypes...

SleepEEGNet: Automated sleep stage scoring with sequence to sequence deep learning approach.

PloS one
Electroencephalogram (EEG) is a common base signal used to monitor brain activities and diagnose sleep disorders. Manual sleep stage scoring is a time-consuming task for sleep experts and is limited by inter-rater reliability. In this paper, we propo...

Adaptive Augmentation of Medical Data Using Independently Conditional Variational Auto-Encoders.

IEEE transactions on medical imaging
Current deep supervised learning methods typically require large amounts of labeled data for training. Since there is a significant cost associated with clinical data acquisition and labeling, medical datasets used for training these models are relat...

Deep learning-based survival prediction of oral cancer patients.

Scientific reports
The Cox proportional hazards model commonly used to evaluate prognostic variables in survival of cancer patients may be too simplistic to properly predict a cancer patient's outcome since it assumes that the outcome is a linear combination of covaria...

Denoising of 3D magnetic resonance images using a residual encoder-decoder Wasserstein generative adversarial network.

Medical image analysis
Structure-preserved denoising of 3D magnetic resonance imaging (MRI) images is a critical step in medical image analysis. Over the past few years, many algorithms with impressive performances have been proposed. In this paper, inspired by the idea of...

A Hybrid Global-Local Representation CNN Model for Automatic Cataract Grading.

IEEE journal of biomedical and health informatics
Cataract is one of the most serious eye diseases leading to blindness. Early detection and treatment can reduce the rate of blindness in cataract patients. However, the professional knowledge of ophthalmologists is necessary for the clinical cataract...

Association of genomic subtypes of lower-grade gliomas with shape features automatically extracted by a deep learning algorithm.

Computers in biology and medicine
Recent analysis identified distinct genomic subtypes of lower-grade glioma tumors which are associated with shape features. In this study, we propose a fully automatic way to quantify tumor imaging characteristics using deep learning-based segmentati...

Performance of a Deep Learning Model vs Human Reviewers in Grading Endoscopic Disease Severity of Patients With Ulcerative Colitis.

JAMA network open
IMPORTANCE: Assessing endoscopic disease severity in ulcerative colitis (UC) is a key element in determining therapeutic response, but its use in clinical practice is limited by the requirement for experienced human reviewers.

PiPred - a deep-learning method for prediction of π-helices in protein sequences.

Scientific reports
Canonical π-helices are short, relatively unstable secondary structure elements found in proteins. They comprise seven or more residues and are present in 15% of all known protein structures, often in functionally important regions such as ligand- an...