AIMC Topic: Deep Learning

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Enhancing Gene Expression Predictions Using Deep Learning and Functional Annotations.

Genetic epidemiology
Transcriptome-wide association studies (TWAS) aim to uncover genotype-phenotype relationships through a two-stage procedure: predicting gene expression from genotypes using an expression quantitative trait locus (eQTL) data set, then testing the pred...

Augmented histopathology: Enhancing colon cancer detection through deep learning and ensemble techniques.

Microscopy research and technique
Colon cancer poses a significant threat to human life with a high global mortality rate. Early and accurate detection is crucial for improving treatment quality and the survival rate. This paper presents a comprehensive approach to enhance colon canc...

Neural Memory State Space Models for Medical Image Segmentation.

International journal of neural systems
With the rapid advancement of deep learning, computer-aided diagnosis and treatment have become crucial in medicine. UNet is a widely used architecture for medical image segmentation, and various methods for improving UNet have been extensively explo...

Prediction of Crohn's disease based on deep feature recognition.

Computational biology and chemistry
BACKGROUND: Crohn's disease is a complex genetic disease that involves chronic gastrointestinal inflammation and results from a complex set of genetic, environmental, and immunological factors. By analyzing data from the human microbiome, genetic inf...

Deep learning segmentation model for quantification of infarct size in pigs with myocardial ischemia/reperfusion.

Basic research in cardiology
Infarct size (IS) is the most robust end point for evaluating the success of preclinical studies on cardioprotection. The gold standard for IS quantification in ischemia/reperfusion (I/R) experiments is triphenyl tetrazolium chloride (TTC) staining, ...

Joint self-supervised and supervised contrastive learning for multimodal MRI data: Towards predicting abnormal neurodevelopment.

Artificial intelligence in medicine
The integration of different imaging modalities, such as structural, diffusion tensor, and functional magnetic resonance imaging, with deep learning models has yielded promising outcomes in discerning phenotypic characteristics and enhancing disease ...

DeepAIP: Deep learning for anti-inflammatory peptide prediction using pre-trained protein language model features based on contextual self-attention network.

International journal of biological macromolecules
Non-steroidal anti-inflammatory drugs (NSAIDs), glucocorticoids, and other immunosuppressants are commonly used medications for treating inflammation. However, these drugs often come with numerous side effects. Therefore, finding more effective metho...

Visual interpretation of deep learning model in ECG classification: A comprehensive evaluation of feature attribution methods.

Computers in biology and medicine
Feature attribution methods can visually highlight specific input regions containing influential aspects affecting a deep learning model's prediction. Recently, the use of feature attribution methods in electrocardiogram (ECG) classification has been...

Deep learning sharpens vistas on biodiversity mapping.

Proceedings of the National Academy of Sciences of the United States of America

Patient-Specific Myocardial Infarction Risk Thresholds From AI-Enabled Coronary Plaque Analysis.

Circulation. Cardiovascular imaging
BACKGROUND: Plaque quantification from coronary computed tomography angiography has emerged as a valuable predictor of cardiovascular risk. Deep learning can provide automated quantification of coronary plaque from computed tomography angiography. We...