AIMC Topic: Embryonic Development
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Deep manifold learning reveals hidden developmental dynamics of a human embryo model.
Science advances
Aug 6, 2025
In this study, postimplantation human epiblast and amnion development are modeled using a stem cell-based embryoid system. A dataset of 3697 fluorescent images, along with tissue, cavity, and cell masks, is generated from experimental data. A computa...
Deep learning-based high-resolution time inference for deciphering dynamic gene regulation from fixed embryos.
Nature communications
Jul 16, 2025
Embryo development is driven by the spatiotemporal dynamics of complex gene regulatory networks. Uncovering these dynamics requires simultaneous tracking of multiple fluctuating molecular species over time, which exceeds the capabilities of tradition...
Development and validation of machine learning models for predicting blastocyst yield in IVF cycles.
Scientific reports
Jul 2, 2025
Predicting blastocyst formation poses significant challenges in reproductive medicine and critically influences clinical decision-making regarding extended embryo culture. While previous research has primarily focused on determining whether an IVF cy...
Artificial intelligence outperforms humans in morphology-based oocyte selection in cattle.
Scientific reports
Jul 1, 2025
Evaluating cumulus-oocyte complex (COC) morphology is commonly used to assess oocyte quality. However, clear guidelines on interpreting COC morphology data are lacking as this evaluation method is subjective. In the present study, individual in vitro...
Integrating genetic variation with deep learning provides context for variants impacting transcription factor binding during embryogenesis.
Genome research
May 2, 2025
Understanding how genetic variation impacts transcription factor (TF) binding remains a major challenge, limiting our ability to model disease-associated variants. Here, we used a highly controlled system of F crosses with extensive genetic diversity...
Multi-omics analyses and machine learning prediction of oviductal responses in the presence of gametes and embryos.
eLife
Feb 26, 2025
The oviduct is the site of fertilization and preimplantation embryo development in mammals. Evidence suggests that gametes alter oviductal gene expression. To delineate the adaptive interactions between the oviduct and gamete/embryo, we performed a m...
Learning-based inference of longitudinal image changes: Applications in embryo development, wound healing, and aging brain.
Proceedings of the National Academy of Sciences of the United States of America
Feb 20, 2025
Longitudinal imaging data are routinely acquired for health studies and patient monitoring. A central goal in longitudinal studies is tracking relevant change over time. Traditional methods remove nuisance variation with custom pipelines to focus on ...
X-scPAE: An explainable deep learning model for embryonic lineage allocation prediction based on single-cell transcriptomics revealing key genes in embryonic cell development.
Computers in biology and medicine
Feb 12, 2025
In single-cell transcriptomics research, accurately predicting cell lineage allocation and identifying differences between lineages are crucial for understanding cell differentiation processes and reducing early pregnancy miscarriages in humans. This...
Application of a methodological framework for the development and multicenter validation of reliable artificial intelligence in embryo evaluation.
Reproductive biology and endocrinology : RB&E
Jan 31, 2025
BACKGROUND: Artificial intelligence (AI) models analyzing embryo time-lapse images have been developed to predict the likelihood of pregnancy following in vitro fertilization (IVF). However, limited research exists on methods ensuring AI consistency ...
The regulatory landscape of 5' UTRs in translational control during zebrafish embryogenesis.
Developmental cell
Jan 15, 2025
The 5' UTRs of mRNAs are critical for translation regulation during development, but their in vivo regulatory features are poorly characterized. Here, we report the regulatory landscape of 5' UTRs during early zebrafish embryogenesis using a massivel...
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