AIMC Topic: Embryonic Development

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Uncovering developmental time and tempo using deep learning.

Nature methods
During animal development, embryos undergo complex morphological changes over time. Differences in developmental tempo between species are emerging as principal drivers of evolutionary novelty, but accurate description of these processes is very chal...

Multi-batch single-cell comparative atlas construction by deep learning disentanglement.

Nature communications
Cell state atlases constructed through single-cell RNA-seq and ATAC-seq analysis are powerful tools for analyzing the effects of genetic and drug treatment-induced perturbations on complex cell systems. Comparative analysis of such atlases can yield ...

Association between a deep learning-based scoring system with morphokinetics and morphological alterations in human embryos.

Reproductive biomedicine online
RESEARCH QUESTION: What is the association between the deep learning-based scoring system, iDAScore, and biological events during the pre-implantation period?

Stain-free detection of embryo polarization using deep learning.

Scientific reports
Polarization of the mammalian embryo at the right developmental time is critical for its development to term and would be valuable in assessing the potential of human embryos. However, tracking polarization requires invasive fluorescence staining, im...

Time-Lapse Systems: A Comprehensive Analysis on Effectiveness.

Seminars in reproductive medicine
Time-lapse systems have quickly become a common feature of in vitro fertilization laboratories all over the world. Since being introduced over a decade ago, the alleged benefits of time-lapse technology have continued to grow, from undisturbed cultur...

Deep learning is widely applicable to phenotyping embryonic development and disease.

Development (Cambridge, England)
Genome editing simplifies the generation of new animal models for congenital disorders. However, the detailed and unbiased phenotypic assessment of altered embryonic development remains a challenge. Here, we explore how deep learning (U-Net) can auto...

Multifactor Prediction of Embryo Transfer Outcomes Based on a Machine Learning Algorithm.

Frontiers in endocrinology
fertilization-embryo transfer (IVF-ET) technology make it possible for infertile couples to conceive a baby successfully. Nevertheless, IVF-ET does not guarantee success. Frozen embryo transfer (FET) is an important supplement to IVF-ET. Many factor...

Deep learning early warning system for embryo culture conditions and embryologist performance in the ART laboratory.

Journal of assisted reproduction and genetics
Staff competency is a crucial component of the in vitro fertilization (IVF) laboratory quality management system because it impacts clinical outcomes and informs the key performance indicators (KPIs) used to continuously monitor and assess culture co...

Development of deep learning algorithms for predicting blastocyst formation and quality by time-lapse monitoring.

Communications biology
Approaches to reliably predict the developmental potential of embryos and select suitable embryos for blastocyst culture are needed. The development of time-lapse monitoring (TLM) and artificial intelligence (AI) may help solve this problem. Here, we...

FlyIT: Drosophila Embryogenesis Image Annotation based on Image Tiling and Convolutional Neural Networks.

IEEE/ACM transactions on computational biology and bioinformatics
With the rise of image-based transcriptomics, spatial gene expression data has become increasingly important for understanding gene regulations from the tissue level down to the cell level. Especially, the gene expression images of Drosophila embryos...