AIMC Topic: Gene Regulatory Networks

Clear Filters Showing 591 to 600 of 830 articles

Stability Analysis of Genetic Regulatory Networks With Switching Parameters and Time Delays.

IEEE transactions on neural networks and learning systems
This paper is concerned with the exponential stability analysis of genetic regulatory networks (GRNs) with switching parameters and time delays. In this paper, a new integral inequality and an improved reciprocally convex combination inequality are c...

Machine learning workflow to enhance predictions of Adverse Drug Reactions (ADRs) through drug-gene interactions: application to drugs for cutaneous diseases.

Scientific reports
Adverse drug reactions (ADRs) pose critical public health issues, affecting over 6% of hospitalized patients. While knowledge of potential drug-drug interactions (DDI) is necessary to prevent ADR, the rapid pace of drug discovery makes it challenging...

Data mining and pathway analysis of glucose-6-phosphate dehydrogenase with natural language processing.

Molecular medicine reports
Human glucose-6-phosphate dehydrogenase (G6PD) is a crucial enzyme in the pentose phosphate pathway, and serves an important role in biosynthesis and the redox balance. G6PD deficiency is a major cause of neonatal jaundice and acute hemolyticanemia, ...

Recurrent neural network-based modeling of gene regulatory network using elephant swarm water search algorithm.

Journal of bioinformatics and computational biology
Correct inference of genetic regulations inside a cell from the biological database like time series microarray data is one of the greatest challenges in post genomic era for biologists and researchers. Recurrent Neural Network (RNN) is one of the mo...

Omics Data Complementarity Underlines Functional Cross-Communication in Yeast.

Journal of integrative bioinformatics
Mapping the complete functional layout of a cell and understanding the cross-talk between different processes are fundamental challenges. They elude us because of the incompleteness and noisiness of molecular data and because of the computational int...

A review of active learning approaches to experimental design for uncovering biological networks.

PLoS computational biology
Various types of biological knowledge describe networks of interactions among elementary entities. For example, transcriptional regulatory networks consist of interactions among proteins and genes. Current knowledge about the exact structure of such ...

TIGERi: modeling and visualizing the responses to perturbation of a transcription factor network.

BMC bioinformatics
BACKGROUND: Transcription factor (TF) networks play a key role in controlling the transfer of genetic information from gene to mRNA. Much progress has been made on understanding and reverse-engineering TF network topologies using a range of experimen...

NFPscanner: a webtool for knowledge-based deciphering of biomedical networks.

BMC bioinformatics
BACKGROUND: Many biological pathways have been created to represent different types of knowledge, such as genetic interactions, metabolic reactions, and gene-regulating and physical-binding relationships. Biologists are using a wide range of omics da...

A time series driven decomposed evolutionary optimization approach for reconstructing large-scale gene regulatory networks based on fuzzy cognitive maps.

BMC bioinformatics
BACKGROUND: Reconstructing gene regulatory networks (GRNs) from expression data plays an important role in understanding the fundamental cellular processes and revealing the underlying relations among genes. Although many algorithms have been propose...