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Genetic Markers

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Development of a Bioinformatics Framework for Identification and Validation of Genomic Biomarkers and Key Immunopathology Processes and Controllers in Infectious and Non-infectious Severe Inflammatory Response Syndrome.

Frontiers in immunology
Sepsis is defined as dysregulated host response caused by systemic infection, leading to organ failure. It is a life-threatening condition, often requiring admission to an intensive care unit (ICU). The causative agents and processes involved are mul...

Impact of Gene Biomarker Discovery Tools Based on Protein-Protein Interaction and Machine Learning on Performance of Artificial Intelligence Models in Predicting Clinical Stages of Breast Cancer.

Interdisciplinary sciences, computational life sciences
Breast cancer, as one of the most common diseases threatening the women's life, has attracted serious attention of the clinical and biomedical researchers worldwide. The genome-based studies along with their registered GEO datasets are frequent in th...

How Machine Learning Methods Helped Find Putative Rye Wax Genes Among GBS Data.

International journal of molecular sciences
The standard approach to genetic mapping was supplemented by machine learning (ML) to establish the location of the rye gene associated with epicuticular wax formation (glaucous phenotype). Over 180 plants of the biparental F population were genotype...

A machine learning-based clinical tool for diagnosing myopathy using multi-cohort microarray expression profiles.

Journal of translational medicine
BACKGROUND: Myopathies are a heterogenous collection of disorders characterized by dysfunction of skeletal muscle. In practice, myopathies are frequently encountered by physicians and precise diagnosis remains a challenge in primary care. Molecular e...

Identification of early liver toxicity gene biomarkers using comparative supervised machine learning.

Scientific reports
Screening agrochemicals and pharmaceuticals for potential liver toxicity is required for regulatory approval and is an expensive and time-consuming process. The identification and utilization of early exposure gene signatures and robust predictive mo...

Integrated Learning: Screening Optimal Biomarkers for Identifying Preeclampsia in Placental mRNA Samples.

Computational and mathematical methods in medicine
Preeclampsia (PE) is a maternal disease that causes maternal and child death. Treatment and preventive measures are not sound enough. The problem of PE screening has attracted much attention. The purpose of this study is to screen placental mRNA to o...

A machine learning method based on the genetic and world competitive contests algorithms for selecting genes or features in biological applications.

Scientific reports
Gene/feature selection is an essential preprocessing step for creating models using machine learning techniques. It also plays a critical role in different biological applications such as the identification of biomarkers. Although many feature/gene s...

Evaluation of supervised machine-learning methods for predicting appearance traits from DNA.

Forensic science international. Genetics
The prediction of human externally visible characteristics (EVCs) based solely on DNA information has become an established approach in forensic and anthropological genetics in recent years. While for a large set of EVCs, predictive models have alrea...

Machine learning, transcriptome, and genotyping chip analyses provide insights into SNP markers identifying flower color in Platycodon grandiflorus.

Scientific reports
Bellflower is an edible ornamental gardening plant in Asia. For predicting the flower color in bellflower plants, a transcriptome-wide approach based on machine learning, transcriptome, and genotyping chip analyses was used to identify SNP markers. S...

Prediction of Essential Genes in Comparison States Using Machine Learning.

IEEE/ACM transactions on computational biology and bioinformatics
Identifying essential genes in comparison states (EGS) is vital to understanding cell differentiation, performing drug discovery, and identifying disease causes. Here, we present a machine learning method termed Prediction of Essential Genes in Compa...