AIMC Topic: Knowledge Bases

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Novel knowledge-based system with relation detection and textual evidence for question answering research.

PloS one
With the development of large-scale knowledge bases (KBs), knowledge-based question answering (KBQA) has become an important research topic in recent years. The key task in KBQA is relation detection, which is the process of finding a compatible answ...

HLBS-PopOmics: an online knowledge base to accelerate dissemination and implementation of research advances in population genomics to reduce the burden of heart, lung, blood, and sleep disorders.

Genetics in medicine : official journal of the American College of Medical Genetics
Recent dramatic advances in multiomics research coupled with exponentially increasing volume, complexity, and interdisciplinary nature of publications are making it challenging for scientists to stay up-to-date on the literature. Strategies to addres...

Linked open data-based framework for automatic biomedical ontology generation.

BMC bioinformatics
BACKGROUND: Fulfilling the vision of Semantic Web requires an accurate data model for organizing knowledge and sharing common understanding of the domain. Fitting this description, ontologies are the cornerstones of Semantic Web and can be used to so...

DES-Mutation: System for Exploring Links of Mutations and Diseases.

Scientific reports
During cellular division DNA replicates and this process is the basis for passing genetic information to the next generation. However, the DNA copy process sometimes produces a copy that is not perfect, that is, one with mutations. The collection of ...

Drug-drug interaction extraction from biomedical texts using long short-term memory network.

Journal of biomedical informatics
The simultaneous administration of multiple drugs increases the probability of interaction among them, as one drug may affect the activities of others. This interaction among drugs may have a positive or negative impact on the therapeutic outcomes. T...

Redesigning the Materials and Catalysts Database Construction Process Using Ontologies.

Journal of chemical information and modeling
Materials and catalyst informatics are emerging fields that are a result of shifts in terms of how materials and catalysts are discovered in the fields of materials science and catalysis. However, these fields are not reaching their full potential du...

Automated ontology generation framework powered by linked biomedical ontologies for disease-drug domain.

Computer methods and programs in biomedicine
OBJECTIVE AND BACKGROUND: The exponential growth of the unstructured data available in biomedical literature, and Electronic Health Record (EHR), requires powerful novel technologies and architectures to unlock the information hidden in the unstructu...

Knowledge-Based Planning for Identifying High-Risk Stereotactic Ablative Radiation Therapy Treatment Plans for Lung Tumors Larger Than 5 cm.

International journal of radiation oncology, biology, physics
PURPOSE: Stereotactic ablative body radiation therapy (SABR) for lung tumors ≥5 cm can be associated with more toxicity than that for smaller tumors. We investigated the relationship between dosimetry and toxicity and used a knowledge-based planning ...

Mind the Gap: From Tool to Knowledge Base.

Biopreservation and biobanking
With the ethical, legal, and societal issues (ELSI) Knowledge Base, we introduce a key element of the Biobanking and Biomolecular Resources Research Infrastructure-European Research Infrastructure Consortium (BBMRI-ERIC) Common Service ELSI, which pr...

Building a knowledge base: Predicting self-derivation through integration in 6- to 10-year-olds.

Journal of experimental child psychology
Self-derivation of new factual knowledge through integration of separate episodes of learning is one means by which children build knowledge. Content generated in this manner becomes incorporated into the knowledge base and is retained over time; suc...