AIMC Topic: Microscopy

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Cell Type Classification and Unsupervised Morphological Phenotyping From Low-Resolution Images Using Deep Learning.

Scientific reports
Convolutional neural networks (ConvNets) have proven to be successful in both the classification and semantic segmentation of cell images. Here we establish a method for cell type classification utilizing images taken with a benchtop microscope direc...

Towards pixel-to-pixel deep nucleus detection in microscopy images.

BMC bioinformatics
BACKGROUND: Nucleus is a fundamental task in microscopy image analysis and supports many other quantitative studies such as object counting, segmentation, tracking, etc. Deep neural networks are emerging as a powerful tool for biomedical image comput...

Predicting the future direction of cell movement with convolutional neural networks.

PloS one
Image-based deep learning systems, such as convolutional neural networks (CNNs), have recently been applied to cell classification, producing impressive results; however, application of CNNs has been confined to classification of the current cell sta...

Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting.

PLoS computational biology
Cellular microscopy images contain rich insights about biology. To extract this information, researchers use features, or measurements of the patterns of interest in the images. Here, we introduce a convolutional neural network (CNN) to automatically...

Precise Pollen Grain Detection in Bright Field Microscopy Using Deep Learning Techniques.

Sensors (Basel, Switzerland)
The determination of daily concentrations of atmospheric pollen is important in the medical and biological fields. Obtaining pollen concentrations is a complex and time-consuming task for specialized personnel. The automatic location of pollen grains...

An augmented reality microscope with real-time artificial intelligence integration for cancer diagnosis.

Nature medicine
The microscopic assessment of tissue samples is instrumental for the diagnosis and staging of cancer, and thus guides therapy. However, these assessments demonstrate considerable variability and many regions of the world lack access to trained pathol...

Deep learning-based color holographic microscopy.

Journal of biophotonics
We report a framework based on a generative adversarial network that performs high-fidelity color image reconstruction using a single hologram of a sample that is illuminated simultaneously by light at three different wavelengths. The trained network...

Characterization of Nanoscale Organization of F-Actin in Morphologically Distinct Dendritic Spines Using Supervised Learning.

eNeuro
The cytoarchitecture of a neuron is very important in defining morphology and ultrastructure. Although there is a wealth of information on the molecular components that make and regulate these ultrastructures, there is a dearth of understanding of ho...

Artificial intelligence for microscopy: what you should know.

Biochemical Society transactions
Artificial Intelligence based on Deep Learning (DL) is opening new horizons in biomedical research and promises to revolutionize the microscopy field. It is now transitioning from the hands of experts in computer sciences to biomedical researchers. H...

Deep learning outperformed 11 pathologists in the classification of histopathological melanoma images.

European journal of cancer (Oxford, England : 1990)
BACKGROUND: The diagnosis of most cancers is made by a board-certified pathologist based on a tissue biopsy under the microscope. Recent research reveals a high discordance between individual pathologists. For melanoma, the literature reports on 25-2...