AIMC Topic: Neural Networks, Computer

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Machine learning and deep analytics for biocomputing: call for better explainability.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
The goals of this workshop are to discuss challenges in explainability of current Machine Leaning and Deep Analytics (MLDA) used in biocomputing and to start the discussion on ways to improve it. We define explainability in MLDA as easy to use inform...

Deep Integrative Analysis for Survival Prediction.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
Survival prediction is very important in medical treatment. However, recent leading research is challenged by two factors: 1) the datasets usually come with multi-modality; and 2) sample sizes are relatively small. To solve the above challenges, we d...

MRI to MGMT: predicting methylation status in glioblastoma patients using convolutional recurrent neural networks.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
Glioblastoma Multiforme (GBM), a malignant brain tumor, is among the most lethal of all cancers. Temozolomide is the primary chemotherapy treatment for patients diagnosed with GBM. The methylation status of the promoter or the enhancer regions of the...

A hybrid CNN feature model for pulmonary nodule malignancy risk differentiation.

Journal of X-ray science and technology
The malignancy risk differentiation of pulmonary nodule is one of the most challenge tasks of computer-aided diagnosis (CADx). Most recently reported CADx methods or schemes based on texture and shape estimation have shown relatively satisfactory on ...

Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes.

Journal of the American Medical Informatics Association : JAMIA
We propose Segment Convolutional Neural Networks (Seg-CNNs) for classifying relations from clinical notes. Seg-CNNs use only word-embedding features without manual feature engineering. Unlike typical CNN models, relations between 2 concepts are ident...

SPICODYN: A Toolbox for the Analysis of Neuronal Network Dynamics and Connectivity from Multi-Site Spike Signal Recordings.

Neuroinformatics
We implemented an automated and efficient open-source software for the analysis of multi-site neuronal spike signals. The software package, named SPICODYN, has been developed as a standalone windows GUI application, using C# programming language with...

Mining e-cigarette adverse events in social media using Bi-LSTM recurrent neural network with word embedding representation.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Recent years have seen increased worldwide popularity of e-cigarette use. However, the risks of e-cigarettes are underexamined. Most e-cigarette adverse event studies have achieved low detection rates due to limited subject sample sizes in...