AIMC Topic: Plant Proteins

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Decoding the cis-regulation of tomato fruit development with deep learning.

The Plant cell May 24, 2022
Plant Proteins Gene Expression Regulation, Plant Deep Learning Solanum lycopersicum Fruit
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Genome-wide cis-decoding for expression design in tomato using cistrome data and explainable deep learning.

The Plant cell May 24, 2022
In the evolutionary history of plants, variation in cis-regulatory elements (CREs) resulting in diversification of gene expression has played a central role in driving the evolution of lineage-specific traits. However, it is difficult to predict expr...
Deep Learning Plant Proteins Gene Expression Regulation, Plant Regulatory Sequences, Nucleic Acid Transcription Factors Solanum lycopersicum Fruit
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Prediction of Rice Transcription Start Sites Using TransPrise: A Novel Machine Learning Approach.

Methods in molecular biology (Clifton, N.J.) Jan 1, 2021
As the interest in genetic resequencing increases, so does the need for effective mathematical, computational, and statistical approaches. One of the difficult problems in genome annotation is determination of precise positions of transcription start...
Plant Proteins Promoter Regions, Genetic Transcription, Genetic Genome, Plant Gene Expression Regulation, Plant Machine Learning Transcription Initiation Site Software Oryza
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The anti-ageing effects of a natural peptide discovered by artificial intelligence.

International journal of cosmetic science Aug 1, 2020
OBJECTIVE: As skin ages, impaired extracellular matrix (ECM) protein synthesis and increased action of degradative enzymes manifest as atrophy, wrinkling and laxity. There is mounting evidence for the functional role of exogenous peptides across many...
Deep Learning Pilot Projects Cell Proliferation Aging Middle Aged Peptides Keratinocytes Plant Proteins Proof of Concept Study Cell Movement Double-Blind Method Cosmetics Humans Cells, Cultured Female Reproducibility of Results Aged Extracellular Matrix Proteins Placebos Pisum sativum
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VacPred: Sequence-based prediction of plant vacuole proteins using machine-learning techniques.

Journal of biosciences Jan 1, 2020
Subcellular localization prediction of the proteome is one of major goals of large-scale genome or proteome sequencing projects to define the gene functions that could be possible with the help of computational modeling techniques. Previously, differ...
Vacuoles Plant Proteins Plant Cells Viridiplantae Databases, Protein Datasets as Topic Software ROC Curve Computational Biology Proteome Support Vector Machine
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TSSPlant: a new tool for prediction of plant Pol II promoters.

Nucleic acids research May 5, 2017
Our current knowledge of eukaryotic promoters indicates their complex architecture that is often composed of numerous functional motifs. Most of known promoters include multiple and in some cases mutually exclusive transcription start sites (TSSs). M...
Neural Networks, Computer Software Sequence Analysis, DNA Gene Expression Transcription Initiation Site Oryza RNA Polymerase II Plant Proteins Genome, Plant Promoter Regions, Genetic Arabidopsis
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SChloro: directing Viridiplantae proteins to six chloroplastic sub-compartments.

Bioinformatics (Oxford, England) Feb 1, 2017
MOTIVATION: Chloroplasts are organelles found in plants and involved in several important cell processes. Similarly to other compartments in the cell, chloroplasts have an internal structure comprising several sub-compartments, where different protei...
Machine Learning Chloroplasts Plant Proteins Software Viridiplantae Computational Biology Protein Transport Sequence Analysis, Protein Membrane Proteins
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Antioxidant and antiproliferative activities of protein hydrolysate from the rhizomes of Zingiberaceae plants.

Pakistan journal of pharmaceutical sciences Nov 1, 2016
Plant proteins have been investigated for their antioxidant activities, but there are still no reports detailing the antioxidant activity levels of plants in the Zingiberaceae family, which are popular food agents and used in folklore medicine. In th...
Molecular Weight Inhibitory Concentration 50 Plant Proteins Hep G2 Cells Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization Ascorbic Acid Antioxidants Dose-Response Relationship, Drug Humans Biphenyl Compounds Zingiberaceae Antineoplastic Agents, Phytogenic Neoplasms Plant Extracts Plants, Medicinal Protein Hydrolysates Picrates Cell Proliferation Rhizome Phytotherapy Chromatography, Ion Exchange
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