AIMC Topic: Programming Languages

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Identification of Gene Regulatory Networks from Single-Cell Expression Data.

Methods in molecular biology (Clifton, N.J.) Jan 1, 2021
Single-cell RNAseq is an emerging technology that allows the quantification of gene expression in individual cells. In plants, single-cell sequencing technology has been applied to generate root cell expression maps under many experimental conditions...
Machine Learning Gene Regulatory Networks Computational Biology Sequence Analysis, DNA Programming Languages Software Single-Cell Analysis RNA-Seq Chromatin Chromatin Immunoprecipitation Sequencing
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Machine Learning and Perturbation Theory Machine Learning (PTML) in Medicinal Chemistry, Biotechnology, and Nanotechnology.

Current topics in medicinal chemistry Jan 1, 2021
Recently, different authors have reported Perturbation Theory (PT) methods combined with machine learning (ML) to obtain PTML (PT + ML) models. They have applied PTML models to the study of different biological systems. Here we present one state-of-a...
Chemistry, Pharmaceutical Biotechnology Drug Discovery Nanotechnology Programming Languages Machine Learning
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Ten computer codes that transformed science.

Nature Jan 1, 2021
Weather Programming Languages Datasets as Topic History, 21st Century Computational Biology United States Databases, Protein Fourier Analysis Physics National Institutes of Health (U.S.) Preprints as Topic National Library of Medicine (U.S.) History, 20th Century Databases, Nucleic Acid Neural Networks, Computer Deep Learning Time Factors Algorithms Databases, Factual
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Deus Ex Machina? Predicting SARS-CoV-2 Infection from Lab Tests Using Machine Learning.

Clinical chemistry Nov 1, 2020
Betacoronavirus Pneumonia, Viral Probability Blood Cell Count Clinical Laboratory Techniques Electronic Health Records SARS-CoV-2 Reverse Transcriptase Polymerase Chain Reaction Programming Languages Laboratories Coronavirus Infections COVID-19 Testing Pandemics COVID-19 Algorithms Humans Machine Learning
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medExtractR: A targeted, customizable approach to medication extraction from electronic health records.

Journal of the American Medical Informatics Association : JAMIA Mar 1, 2020
OBJECTIVE: We developed medExtractR, a natural language processing system to extract medication information from clinical notes. Using a targeted approach, medExtractR focuses on individual drugs to facilitate creation of medication-specific research...
Drug Therapy Algorithms Electronic Health Records Natural Language Processing Programming Languages Datasets as Topic Pharmaceutical Preparations Data Mining Humans Software
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Evaluation of the Fast Healthcare Interoperability Resources (FHIR) Standard for Representation of Knowledge Bases Encoded in the Arden Syntax.

Studies in health technology and informatics Aug 21, 2019
CONTEXT: Arden Syntax is a standard that encodes knowledge as Medical Logic Modules (MLMs) but lacks a standard query data model and terminology.
Research Design Health Information Systems Knowledge Bases Programming Languages Information Storage and Retrieval
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3Dscript: animating 3D/4D microscopy data using a natural-language-based syntax.

Nature methods Apr 1, 2019
Diagnostic Imaging Rotation Colonic Neoplasms Programming Languages Motion Microscopy Mice Computational Biology Natural Language Processing Reproducibility of Results Animals Imaging, Three-Dimensional Software Algorithms
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Deep into Patient care: An automated deep learning approach for reshaping patient care in clinical setting.

Computer methods and programs in biomedicine Jan 1, 2019
Genome-Wide Association Study Treatment Outcome Models, Statistical Reproducibility of Results Deep Learning Computer Systems Medical Informatics Proportional Hazards Models Patient Care Leukocytes Programming Languages Algorithms Computer Simulation Neural Networks, Computer Software Humans
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How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications.

Briefings in bioinformatics May 1, 2018
We present a rationale for expanding the presence of the Lisp family of programming languages in bioinformatics and computational biology research. Put simply, Lisp-family languages enable programmers to more quickly write programs that run faster th...
Artificial Intelligence Software Computational Biology Programming Languages
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Light-Weighted Automatic Import of Standardized Ontologies into the Content Management System Drupal.

Studies in health technology and informatics Jan 1, 2017
The amount of ontologies, which are utilizable for widespread domains, is growing steadily. BioPortal alone, embraces over 500 published ontologies with nearly 8 million classes. In contrast, the vast informative content of these ontologies is only d...
Programming Languages Semantics Knowledge Biological Ontologies
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