AIMC Topic: SARS-CoV-2

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A Large Language Model-Powered Map of Metabolomics Research.

Analytical chemistry
We present a comprehensive map of the metabolomics research landscape, synthesizing insights from over 80,000 publications. Using PubMedBERT, we transformed abstracts into 768-dimensional embeddings that capture the nuanced thematic structure of the ...

Exploring Inflammatory Bowel Disease Discourse on Reddit Throughout the COVID-19 Pandemic Using OpenAI's GPT-3.5 Turbo Model: Classification Model Validation and Case Study.

Journal of medical Internet research
BACKGROUND: Inflammatory bowel disease (IBD) is a chronic autoimmune disorder with an increasing prevalence in the general population. Internet-based communities have become vital for communication among patients with IBD, especially throughout the C...

Integrating bioinformatics and machine learning to investigate the mechanisms by which three major respiratory infectious diseases exacerbate heart failure.

Scientific reports
Heart failure (HF) is a severe cardiovascular disease often worsened by respiratory infections like influenza, COVID-19, and community-acquired pneumonia (CAP). This study aims to uncover the molecular commonalities among these respiratory diseases a...

Case study on force compliant robot arm controller for nasopharyngeal swab insertion.

Scientific reports
The nasopharyngeal (NP) swab sample test, commonly used to detect COVID-19 and other respiratory illnesses, involves moving a swab through the nasal cavity to collect samples from the nasopharynx. While typically this is done by human healthcare work...

Profiling short-term longitudinal severity progression and associated genes in COVID-19 patients using EHR and single-cell analysis.

Scientific reports
Here we propose CovSF, a deep learning model designed to track and forecast short-term severity progression of COVID-19 patients using longitudinal clinical records. The motivation stems from the need for timely medical resource allocation, improved ...

Mitochondrial haplogroup A2 is associated with increased COVID-19 mortality in an admixed Brazilian population.

Scientific reports
Mitochondria play a crucial role in cellular respiration and immune responses. Mitochondrial DNA (mtDNA) haplogroups and variants have been associated with various diseases, including COVID-19. This study analyzed complete mtDNA sequences from 467 Br...

Deep learning based knowledge tracing in intelligent tutoring systems.

Scientific reports
The emergence of online education, e.g., intelligent tutoring system (ITS), complements or partially replaces conventional offline education, especially during the COVID-19 pandemic. Knowledge tracing (KT) plays a pivotal role in the intelligent tuto...

Leveraging federated learning and edge computing for pandemic-resilient healthcare.

Scientific reports
The universal demand for the development and deployment of responsive medical infrastructure and damage control techniques, including the application of technology, is the foremost necessity that emerged immediately in the post-pandemic era. Numerous...

Identifying real time surveillance indicators to estimate COVID-19 hospital admissions in Colorado during and after the public health emergency.

Scientific reports
Questions remain about how best to focus surveillance efforts for COVID-19 and other emerging respiratory diseases. We used an archive of COVID-19 data in Colorado from October 2020 to March 2024 to reconstruct seven real-time surveillance indicators...

A textual dataset of de-identified health records in Spanish and Catalan for medical entity recognition and anonymization.

Scientific data
The advancement of clinical natural language processing systems is crucial to exploit the wealth of textual data contained in medical records. Diverse data sources are required in different languages and from different sites to represent global healt...