AIMC Topic:
Software

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Towards IoT-Aided Human-Robot Interaction Using NEP and ROS: A Platform-Independent, Accessible and Distributed Approach.

Sensors (Basel, Switzerland)
This article presents the novel Python, C# and JavaScript libraries of Node Primitives (NEP), a high-level, open, distributed, and component-based framework designed to enable easy development of cross-platform software architectures. NEP is built on...

Deep Learning to Predict Protein Backbone Structure from High-Resolution Cryo-EM Density Maps.

Scientific reports
Cryo-electron microscopy (cryo-EM) has become a leading technology for determining protein structures. Recent advances in this field have allowed for atomic resolution. However, predicting the backbone trace of a protein has remained a challenge on a...

Evaluating sentence representations for biomedical text: Methods and experimental results.

Journal of biomedical informatics
Text representations ar one of the main inputs to various Natural Language Processing (NLP) methods. Given the fast developmental pace of new sentence embedding methods, we argue that there is a need for a unified methodology to assess these differen...

ProNA2020 predicts protein-DNA, protein-RNA, and protein-protein binding proteins and residues from sequence.

Journal of molecular biology
The intricate details of how proteins bind to proteins, DNA, and RNA are crucial for the understanding of almost all biological processes. Disease-causing sequence variants often affect binding residues. Here, we described a new, comprehensive system...

HarborBot: A Chatbot for Social Needs Screening.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Accessing patients' social needs is a critical challenge at emergency departments (EDs). However, most EDs do not have extra staff to administer screeners, and without personnel administration, response rates are low especially for low health literac...

genoDraw: A Web Tool for Developing Pedigree Diagrams Using the Standardized Human Pedigree Nomenclature Integrated with Biomedical Vocabularies.

AMIA ... Annual Symposium proceedings. AMIA Symposium
The integration of genetic information in current clinical routine has raised a need for tools to exploit family genetic knowledge. On the clinical side, an application for managing and visualizing pedigree diagrams could provide genetics specialists...

SOMprocessor: A high throughput FPGA-based architecture for implementing Self-Organizing Maps and its application to video processing.

Neural networks : the official journal of the International Neural Network Society
The design of neuromorphic chips aims to develop electronic circuits dedicated to executing artificial neural networks, mainly by exploring parallel processing. Unsupervised learning models, such as Self-organizing Maps (SOM), may benefit from massiv...

CVSnet: A machine learning approach for automated central vein sign assessment in multiple sclerosis.

NMR in biomedicine
The central vein sign (CVS) is an efficient imaging biomarker for multiple sclerosis (MS) diagnosis, but its application in clinical routine is limited by inter-rater variability and the expenditure of time associated with manual assessment. We descr...

Comparing machine and human reviewers to evaluate the risk of bias in randomized controlled trials.

Research synthesis methods
BACKGROUND: Evidence from new health technologies is growing, along with demands for evidence to inform policy decisions, creating challenges in completing health technology assessments (HTAs)/systematic reviews (SRs) in a timely manner. Software can...

The hunt for sORFs: A multidisciplinary strategy.

Experimental cell research
Growing evidence illustrates the shortcomings on the current understanding of the full complexity of the proteome. Previously overlooked small open reading frames (sORFs) and their encoded microproteins have filled important gaps, exerting their func...