AIMC Topic: Software
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GelGenie: an AI-powered framework for gel electrophoresis image analysis.
Nature communications
May 5, 2025
Gel electrophoresis is a ubiquitous laboratory method for the separation and semi-quantitative analysis of biomolecules. However, gel image analysis principles have barely advanced for decades, in stark contrast to other fields where AI has revolutio...
NeuroXiv: AI-powered open databasing and dynamic mining of brain-wide neuron morphometry.
Nature methods
Apr 29, 2025
Neuron morphology has been extensively reconstructed at the whole-brain scale by various projects in recent years. Here, to facilitate interactive exploration in a standardized and scalable manner, we introduce NeuroXiv (neuroxiv.org), a large-scale ...
Development of an artificial intelligence powered software for automated analysis of skeletal muscle ultrasonography.
Scientific reports
Apr 29, 2025
Muscle ultrasound has high utility in clinical practice and research; however, the main challenges are the training and time required for manual analysis to achieve objective quantification of muscle size and quality. We aimed to develop and validate...
Using artificial intelligence-based software for an unbiased discrimination of immune cell subtypes in the fracture hematoma and bone marrow of non-osteoporotic and osteoporotic mice.
PloS one
Apr 29, 2025
It is well established that the early inflammatory response following fracture is essential for initiating subsequent bone regeneration. An imbalance in inflammation, whether within the innate or adaptive immune response, can result in impaired fract...
GINClus: RNA structural motif clustering using graph isomorphism network.
NAR genomics and bioinformatics
Apr 26, 2025
Ribonucleic acid (RNA) structural motif identification is a crucial step for understanding RNA structure and functionality. Due to the complexity and variations of RNA 3D structures, identifying RNA structural motifs is challenging and time-consuming...
Performance of ChatGPT and Microsoft Copilot in Bing in answering obstetric ultrasound questions and analyzing obstetric ultrasound reports.
Scientific reports
Apr 26, 2025
To evaluate and compare the performance of publicly available ChatGPT-3.5, ChatGPT-4.0 and Microsoft Copilot in Bing (Copilot) in answering obstetric ultrasound questions and analyzing obstetric ultrasound reports. Twenty questions related to obstetr...
A divide-and-conquer approach based on deep learning for long RNA secondary structure prediction: Focus on pseudoknots identification.
PloS one
Apr 25, 2025
The accurate prediction of RNA secondary structure, and pseudoknots in particular, is of great importance in understanding the functions of RNAs since they give insights into their folding in three-dimensional space. However, existing approaches ofte...
OrgaMeas: A pipeline that integrates all the processes of organelle image analysis.
Biochimica et biophysica acta. Molecular cell research
Apr 21, 2025
Although image analysis has emerged as a key technology in the study of organelle dynamics, the commonly used image-processing methods, such as threshold-based segmentation and manual setting of regions of interests (ROIs), are error-prone and labori...
From marker to markerless: Validating DeepLabCut for 2D sagittal plane gait analysis in adults and newly walking toddlers.
Journal of biomechanics
Apr 18, 2025
The use of 3D marker-based motion analysis systems is considered the gold standard for tracking limb movements. However, these systems are expensive, limited to laboratory settings, and difficult to apply when studying paediatric populations. Therefo...
AI-driven cybersecurity framework for software development based on the ANN-ISM paradigm.
Scientific reports
Apr 18, 2025
With the increasing reliance on software applications, cybersecurity threats have become a critical concern for developers and organizations. The answer to this vulnerability is AI systems, which help us adapt a little better, as traditional measures...
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