AIMC Topic: Algorithms

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Wx: a neural network-based feature selection algorithm for transcriptomic data.

Scientific reports
Next-generation sequencing (NGS), which allows the simultaneous sequencing of billions of DNA fragments simultaneously, has revolutionized how we study genomics and molecular biology by generating genome-wide molecular maps of molecules of interest. ...

Visualizing complex feature interactions and feature sharing in genomic deep neural networks.

BMC bioinformatics
BACKGROUND: Visualization tools for deep learning models typically focus on discovering key input features without considering how such low level features are combined in intermediate layers to make decisions. Moreover, many of these methods examine ...

Accurate prediction of potential druggable proteins based on genetic algorithm and Bagging-SVM ensemble classifier.

Artificial intelligence in medicine
Discovering and accurately locating drug targets is of great significance for the research and development of new drugs. As a different approach to traditional drug development, the machine learning algorithm is used to predict the drug target by min...

k-Space deep learning for reference-free EPI ghost correction.

Magnetic resonance in medicine
PURPOSE: Nyquist ghost artifacts in echo planar imaging (EPI) are originated from phase mismatch between the even and odd echoes. However, conventional correction methods using reference scans often produce erroneous results especially in high-field ...

Is it possible to automatically assess pretreatment digital rectal examination documentation using natural language processing? A single-centre retrospective study.

BMJ open
OBJECTIVES: To develop and test a method for automatic assessment of a quality metric, provider-documented pretreatment digital rectal examination (DRE), using the outputs of a natural language processing (NLP) framework.

Design of a tomato classifier based on machine vision.

PloS one
This paper attempts to design an automated, efficient and intelligent tomato grading method that facilitates the graded selling of the fruit. Based on machine vision, the color images of tomatoes with different morphologies were studied, and the colo...

Fully Automated Postlumpectomy Breast Margin Assessment Utilizing Convolutional Neural Network Based Optical Coherence Tomography Image Classification Method.

Academic radiology
BACKGROUND: The purpose of this study was to develop a deep learning classification approach to distinguish cancerous from noncancerous regions within optical coherence tomography (OCT) images of breast tissue for potential use in an intraoperative s...

Dynamic Prediction in Clinical Survival Analysis Using Temporal Convolutional Networks.

IEEE journal of biomedical and health informatics
Accurate prediction of disease trajectories is critical for early identification and timely treatment of patients at risk. Conventional methods in survival analysis are often constrained by strong parametric assumptions and limited in their ability t...

Machine Learning for Automatic Paraspinous Muscle Area and Attenuation Measures on Low-Dose Chest CT Scans.

Academic radiology
RATIONALE AND OBJECTIVES: To develop and evaluate an automated machine learning (ML) algorithm for segmenting the paraspinous muscles on chest computed tomography (CT) scans to evaluate for presence of sarcopenia.

Clinically Applicable Deep Learning Algorithm Using Quantitative Proteomic Data.

Journal of proteome research
Deep learning (DL), a type of machine learning approach, is a powerful tool for analyzing large sets of data that are derived from biomedical sciences. However, it remains unknown whether DL is suitable for identifying contributing factors, such as b...