AIMC Topic: Algorithms

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Use of natural language processing in electronic medical records to identify pregnant women with suicidal behavior: towards a solution to the complex classification problem.

European journal of epidemiology
We developed algorithms to identify pregnant women with suicidal behavior using information extracted from clinical notes by natural language processing (NLP) in electronic medical records. Using both codified data and NLP applied to unstructured cli...

Incorporating automatically learned pulmonary nodule attributes into a convolutional neural network to improve accuracy of benign-malignant nodule classification.

Physics in medicine and biology
Existing deep-learning-based pulmonary nodule classification models usually use images and benign-malignant labels as inputs for training. Image attributes of the nodules, as human-nameable high-level semantic labels, are rarely used to build a convo...

A Neural Machine Translation Model for Arabic Dialects That Utilises Multitask Learning (MTL).

Computational intelligence and neuroscience
In this research article, we study the problem of employing a neural machine translation model to translate Arabic dialects to modern standard Arabic. The proposed solution of the neural machine translation model is prompted by the recurrent neural n...

qTorch: The quantum tensor contraction handler.

PloS one
Classical simulation of quantum computation is necessary for studying the numerical behavior of quantum algorithms, as there does not yet exist a large viable quantum computer on which to perform numerical tests. Tensor network (TN) contraction is an...

Face-from-Depth for Head Pose Estimation on Depth Images.

IEEE transactions on pattern analysis and machine intelligence
Depth cameras allow to set up reliable solutions for people monitoring and behavior understanding, especially when unstable or poor illumination conditions make unusable common RGB sensors. Therefore, we propose a complete framework for the estimatio...

Cell Segmentation Using a Similarity Interface With a Multi-Task Convolutional Neural Network.

IEEE journal of biomedical and health informatics
Even though convolutional neural networks (CNN) have been used for cell segmentation, they require pixel-level ground truth annotations. This paper proposes a multitask learning algorithm for cell detection and segmentation using CNNs. We use dot ann...

Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models.

Nature communications
Knowing the catalytic turnover numbers of enzymes is essential for understanding the growth rate, proteome composition, and physiology of organisms, but experimental data on enzyme turnover numbers is sparse and noisy. Here, we demonstrate that machi...

GOnet: a tool for interactive Gene Ontology analysis.

BMC bioinformatics
BACKGROUND: Biological interpretation of gene/protein lists resulting from -omics experiments can be a complex task. A common approach consists of reviewing Gene Ontology (GO) annotations for entries in such lists and searching for enrichment pattern...

Distillation of the clinical algorithm improves prognosis by multi-task deep learning in high-risk Neuroblastoma.

PloS one
We introduce the CDRP (Concatenated Diagnostic-Relapse Prognostic) architecture for multi-task deep learning that incorporates a clinical algorithm, e.g., a risk stratification schema to improve prognostic profiling. We present the first application ...

Correlation-Aware Sparse and Low-Rank Constrained Multi-Task Learning for Longitudinal Analysis of Alzheimer's Disease.

IEEE journal of biomedical and health informatics
Alzheimer's disease (AD), as a severe neurodegenerative disease, is now attracting more and more researchers' attention in the healthcare. With the development of magnetic resonance imaging (MRI), the neuroimaging-based longitudinal analysis is gradu...