AIMC Topic: Algorithms

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Sorting protein decoys by machine-learning-to-rank.

Scientific reports
Much progress has been made in Protein structure prediction during the last few decades. As the predicted models can span a broad range of accuracy spectrum, the accuracy of quality estimation becomes one of the key elements of successful protein str...

Deep Convolutional Extreme Learning Machine and Its Application in Handwritten Digit Classification.

Computational intelligence and neuroscience
In recent years, some deep learning methods have been developed and applied to image classification applications, such as convolutional neuron network (CNN) and deep belief network (DBN). However they are suffering from some problems like local minim...

Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science.

PloS one
One of the prevailing applications of machine learning is the use of predictive modelling in clinical survival analysis. In this work, we present our view of the current situation of computer tools for survival analysis, stressing the need of transfe...

Cascade of multi-scale convolutional neural networks for bone suppression of chest radiographs in gradient domain.

Medical image analysis
Suppression of bony structures in chest radiographs (CXRs) is potentially useful for radiologists and computer-aided diagnostic schemes. In this paper, we present an effective deep learning method for bone suppression in single conventional CXR using...

Computational analysis of memory capacity in echo state networks.

Neural networks : the official journal of the International Neural Network Society
Reservoir computing became very popular due to its potential for efficient design of recurrent neural networks, exploiting the computational properties of the reservoir structure. Various approaches, ranging from appropriate reservoir initialization ...

Recurrent neural network based hybrid model for reconstructing gene regulatory network.

Computational biology and chemistry
One of the exciting problems in systems biology research is to decipher how genome controls the development of complex biological system. The gene regulatory networks (GRNs) help in the identification of regulatory interactions between genes and offe...

Thought-Controlled Nanoscale Robots in a Living Host.

PloS one
We report a new type of brain-machine interface enabling a human operator to control nanometer-size robots inside a living animal by brain activity. Recorded EEG patterns are recognized online by an algorithm, which in turn controls the state of an e...

Liver Tumor Segmentation from MR Images Using 3D Fast Marching Algorithm and Single Hidden Layer Feedforward Neural Network.

BioMed research international
Objective. Our objective is to develop a computerized scheme for liver tumor segmentation in MR images. Materials and Methods. Our proposed scheme consists of four main stages. Firstly, the region of interest (ROI) image which contains the liver tumo...

Extensive complementarity between gene function prediction methods.

Bioinformatics (Oxford, England)
MOTIVATION: The number of sequenced genomes rises steadily but we still lack the knowledge about the biological roles of many genes. Automated function prediction (AFP) is thus a necessity. We hypothesized that AFP approaches that draw on distinct ge...