AIMC Topic: Animals

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Spliceator: multi-species splice site prediction using convolutional neural networks.

BMC bioinformatics
BACKGROUND: Ab initio prediction of splice sites is an essential step in eukaryotic genome annotation. Recent predictors have exploited Deep Learning algorithms and reliable gene structures from model organisms. However, Deep Learning methods for non...

Automated sleep state classification of wide-field calcium imaging data via multiplex visibility graphs and deep learning.

Journal of neuroscience methods
BACKGROUND: Wide-field calcium imaging (WFCI) allows for monitoring of cortex-wide neural dynamics in mice. When applied to the study of sleep, WFCI data are manually scored into the sleep states of wakefulness, non-REM (NREM) and REM by use of adjun...

Tool for Predicting, Scanning, and Designing Defensins.

Frontiers in immunology
Defensins are host defense peptides present in nearly all living species, which play a crucial role in innate immunity. These peptides provide protection to the host, either by killing microbes directly or indirectly by activating the immune system. ...

The Role of Machine Learning in Cardiovascular Pathology.

The Canadian journal of cardiology
Machine learning has seen slow but steady uptake in diagnostic pathology over the past decade to assess digital whole-slide images. Machine learning tools have incredible potential to standardise, and likely even improve, histopathologic diagnoses, b...

Spatial and temporal dynamics of RhoA activities of single breast tumor cells in a 3D environment revealed by a machine learning-assisted FRET technique.

Experimental cell research
One of the hallmarks of cancer cells is their exceptional ability to migrate within the extracellular matrix (ECM) for gaining access to the circulatory system, a critical step of cancer metastasis. RhoA, a small GTPase, is known to be a key molecula...

Reinforcement learning-based optimization of locomotion controller using multiple coupled CPG oscillators for elongated undulating fin propulsion.

Mathematical biosciences and engineering : MBE
This article proposes a locomotion controller inspired by black Knifefish for undulating elongated fin robot. The proposed controller is built by a modified CPG network using sixteen coupled Hopf oscillators with the feedback of the angle of each fin...

Identification of Alzheimer associated differentially expressed gene through microarray data and transfer learning-based image analysis.

Neuroscience letters
Major factors contribute to mental stress and enhance the progression of late-onset Alzheimer's disease (AD). The factors that lead to neurodegeneration, such as tau protein hyperphosphorylation and increased amyloid-beta production, can be mimicked ...

New Models to Predict the Acute and Chronic Toxicities of Representative Species of the Main Trophic Levels of Aquatic Environments.

Molecules (Basel, Switzerland)
To assess the impact of chemicals on an aquatic environment, toxicological data for three trophic levels are needed to address the chronic and acute toxicities. The use of non-testing methods, such as predictive computational models, was proposed to ...

Manifold learning analysis suggests strategies to align single-cell multimodal data of neuronal electrophysiology and transcriptomics.

Communications biology
Recent single-cell multimodal data reveal multi-scale characteristics of single cells, such as transcriptomics, morphology, and electrophysiology. However, integrating and analyzing such multimodal data to deeper understand functional genomics and ge...

Aedes-AI: Neural network models of mosquito abundance.

PLoS computational biology
We present artificial neural networks as a feasible replacement for a mechanistic model of mosquito abundance. We develop a feed-forward neural network, a long short-term memory recurrent neural network, and a gated recurrent unit network. We evaluat...