AIMC Topic: Animals

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Deep convolutional models improve predictions of macaque V1 responses to natural images.

PLoS computational biology
Despite great efforts over several decades, our best models of primary visual cortex (V1) still predict spiking activity quite poorly when probed with natural stimuli, highlighting our limited understanding of the nonlinear computations in V1. Recent...

High-field mr diffusion-weighted image denoising using a joint denoising convolutional neural network.

Journal of magnetic resonance imaging : JMRI
BACKGROUND: Low signal-to-noise ratio (SNR) has been a major limiting factor for the application of higher-resolution diffusion-weighted imaging (DWI). Most of the conventional denoising models suffer from the drawbacks of shallow feature extraction ...

Recognition pest by image-based transfer learning.

Journal of the science of food and agriculture
BACKGROUND: Plant pests mainly refers to insects and mites that harm crops and products. There are a wide variety of plant pests, with wide distribution, fast reproduction and large quantity, which directly causes serious losses to crops. Therefore, ...

Quantifying the effect of Jacobiasca lybica pest on vineyards with UAVs by combining geometric and computer vision techniques.

PloS one
With the increasing competitiveness in the vine market, coupled with the increasing need for sustainable use of resources, strategies for improving farm management are essential. One such effective strategy is the implementation of precision agricult...

Flow network tracking for spatiotemporal and periodic point matching: Applied to cardiac motion analysis.

Medical image analysis
The accurate quantification of left ventricular (LV) deformation/strain shows significant promise for quantitatively assessing cardiac function for use in diagnosis and therapy planning. However, accurate estimation of the displacement of myocardial ...

SPINDLE: End-to-end learning from EEG/EMG to extrapolate animal sleep scoring across experimental settings, labs and species.

PLoS computational biology
Understanding sleep and its perturbation by environment, mutation, or medication remains a central problem in biomedical research. Its examination in animal models rests on brain state analysis via classification of electroencephalographic (EEG) sign...

Refining humane endpoints in mouse models of disease by systematic review and machine learning-based endpoint definition.

ALTEX
Ideally, humane endpoints allow for early termination of experiments by minimizing an animal's discomfort, distress and pain, while ensuring that scientific objectives are reached. Yet, lack of commonly agreed methodology and heterogeneity of cut-off...

Open-source pipeline for multi-class segmentation of the spinal cord with deep learning.

Magnetic resonance imaging
This paper presents an open-source pipeline to train neural networks to segment structures of interest from MRI data. The pipeline is tailored towards homogeneous datasets and requires relatively low amounts of manual segmentations (few dozen, or les...

Machine learning and complex biological data.

Genome biology
Machine learning has demonstrated potential in analyzing large, complex biological data. In practice, however, biological information is required in addition to machine learning for successful application.