AIMC Topic: Autoencoder

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Efficient few-shot medical image segmentation via self-supervised variational autoencoder.

Medical image analysis
Few-shot medical image segmentation typically uses a joint model for registration and segmentation. The registration model aligns a labeled atlas with unlabeled images to form initial masks, which are then refined by the segmentation model. However, ...

Speech signals-based Parkinson's disease diagnosis using hybrid autoencoder-LSTM models.

Computers in biology and medicine
Parkinson's disease (PD) is a neurodegenerative disorder that occurs as a result of a decrease in the chemical called dopamine in the brain. There is no definitive treatment for PD, but some medications used to control symptoms in the early stages ha...

GeneDX-PBMC: An adversarial autoencoder framework for unlocking Alzheimer's disease biomarkers using blood single-cell RNA sequencing data.

Computers in biology and medicine
OBJECTIVE: To identify blood-based biomarkers and therapeutic targets for Alzheimer's disease (AD) by leveraging single-cell RNA sequencing (scRNA-seq) data from peripheral blood mononuclear cells (PBMCs) and advanced deep learning techniques.

Medication Recommender System for ICU Patients Using Autoencoders.

Studies in health technology and informatics
Patients admitted to the intensive care unit (ICU) are often treated with multiple high-risk medications. Over- and underprescribing of indicated medications, and inappropriate choice of medications frequently occur in the ICU. This risk has to be mi...

GAEDGRN: reconstruction of gene regulatory networks based on gravity-inspired graph autoencoders.

Briefings in bioinformatics
Reconstructing high-resolution gene regulatory networks (GRNs) based on single-cell RNA sequencing data provides an opportunity to gain insight into disease pathogenesis. At present, there are a large number of GRN reconstruction methods based on gra...

FactVAE: a factorized variational autoencoder for single-cell multi-omics data integration analysis.

Briefings in bioinformatics
Single-cell multi-omics technologies have revolutionized the study of cell states and functions by simultaneously profiling multiple molecular layers within individual cells. However, existing methods for integrating these data struggle to preserve c...

CoupleVAE: coupled variational autoencoders for predicting perturbational single-cell RNA sequencing data.

Briefings in bioinformatics
With the rapid advances in single-cell sequencing technology, it is now feasible to conduct in-depth genetic analysis in individual cells. Study on the dynamics of single cells in response to perturbations is of great significance for understanding t...

MAEST: accurately spatial domain detection in spatial transcriptomics with graph masked autoencoder.

Briefings in bioinformatics
Spatial transcriptomics (ST) technology provides gene expression profiles with spatial context, offering critical insights into cellular interactions and tissue architecture. A core task in ST is spatial domain identification, which involves detectin...

Physics-Informed Autoencoder for Prostate Tissue Microstructure Profiling with Hybrid Multidimensional MRI.

Radiology. Artificial intelligence
Purpose To evaluate the performance of Physics-Informed Autoencoder (PIA), a self-supervised deep learning model, in measuring tissue-based biomarkers for prostate cancer (PCa) using hybrid multidimensional MRI. Materials and Methods This retrospecti...

SSL-VQ: vector-quantized variational autoencoders for semi-supervised prediction of therapeutic targets across diverse diseases.

Bioinformatics (Oxford, England)
MOTIVATION: Identifying effective therapeutic targets poses a challenge in drug discovery, especially for uncharacterized diseases without known therapeutic targets (e.g. rare diseases, intractable diseases).