AIMC Topic: Computer Simulation

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A neural network model for goat gait.

Mathematical biosciences and engineering : MBE
In this paper, our main objective was to investigate the central pattern generator (CPG) neural network model for quadruped gait with time delay. First, we computed the normal form of the model on the center manifold, the bifurcation direction, and s...

Prediction of Drug-Induced Liver Injury: From Molecular Physicochemical Properties and Scaffold Architectures to Machine Learning Approaches.

Chemical biology & drug design
The process of developing new drugs is widely acknowledged as being time-intensive and requiring substantial financial investment. Despite ongoing efforts to reduce time and expenses in drug development, ensuring medication safety remains an urgent p...

AI-based IsAb2.0 for antibody design.

Briefings in bioinformatics
Therapeutic antibody design has garnered widespread attention, highlighting its interdisciplinary importance. Advancements in technology emphasize the critical role of designing nanobodies and humanized antibodies in antibody engineering. However, cu...

CAPE: a deep learning framework with Chaos-Attention net for Promoter Evolution.

Briefings in bioinformatics
Predicting the strength of promoters and guiding their directed evolution is a crucial task in synthetic biology. This approach significantly reduces the experimental costs in conventional promoter engineering. Previous studies employing machine lear...

MetaPredictor: in silico prediction of drug metabolites based on deep language models with prompt engineering.

Briefings in bioinformatics
Metabolic processes can transform a drug into metabolites with different properties that may affect its efficacy and safety. Therefore, investigation of the metabolic fate of a drug candidate is of great significance for drug discovery. Computational...

ProTox 3.0: a webserver for the prediction of toxicity of chemicals.

Nucleic acids research
Interaction with chemicals, present in drugs, food, environments, and consumer goods, is an integral part of our everyday life. However, depending on the amount and duration, such interactions can also result in adverse effects. With the increase in ...

TransCell: In Silico Characterization of Genomic Landscape and Cellular Responses by Deep Transfer Learning.

Genomics, proteomics & bioinformatics
Gene expression profiling of new or modified cell lines becomes routine today; however, obtaining comprehensive molecular characterization and cellular responses for a variety of cell lines, including those derived from underrepresented groups, is no...

Computational Analysis of Mechanical Interactions between a Soft Robotic Device and a Skin-Muscle Phantom for Mechanotherapy.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
Studying the soft robot-tissue mechanical interaction in muscle stimulation devices poses a significant challenge due to the complex behavior of the materials involved. To advance this field, this paper models computationally three types of soft elas...

Deep Residual Neural Networks for Spatial EEG Source Imaging.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
EEG source imaging is an indispensable tool for non-invasive study of brain function. Existing methods mainly directly deal with the EEG inverse problem by imposing prior constraints. However, different brain activation patterns may produce similar p...

Automated Assessment of Simulated Laparoscopic Surgical Performance using 3DCNN.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
Artificial intelligence & Computer vision have the potential to improve surgical training, especially for minimally invasive surgery by analyzing intraoperative and simulation videos for training or performance improvement purposes. Among these, tech...