AIMC Topic: Databases, Factual

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EHAI: Enhanced Human Microbe-Disease Association Identification.

Current protein & peptide science
Recently, an increasing number of biological and clinical reports have demonstrated that imbalance of microbial community has the ability to play important roles among several complex diseases concerning human health. Having a good knowledge of disco...

CHDGKB: a knowledgebase for systematic understanding of genetic variations associated with non-syndromic congenital heart disease.

Database : the journal of biological databases and curation
Congenital heart disease (CHD) is one of the most common birth defects, with complex genetic and environmental etiologies. The reports of genetic variation associated with CHD have increased dramatically in recent years due to the revolutionary devel...

mAML: an automated machine learning pipeline with a microbiome repository for human disease classification.

Database : the journal of biological databases and curation
Due to the concerted efforts to utilize the microbial features to improve disease prediction capabilities, automated machine learning (AutoML) systems aiming to get rid of the tediousness in manually performing ML tasks are in great demand. Here we d...

Deep learning-based CAD schemes for the detection and classification of lung nodules from CT images: A survey.

Journal of X-ray science and technology
BACKGROUND: Lung cancer is the most common cancer in the world. Computed tomography (CT) is the standard medical imaging modality for early lung nodule detection and diagnosis that improves patient's survival rate. Recently, deep learning algorithms,...

Breast cancer pathological image classification based on deep learning.

Journal of X-ray science and technology
The automatic classification of breast cancer pathological images has important clinical application value. However, to develop the classification algorithm using the artificially extracted image features faces several challenges including the requir...

Structured reviews for data and knowledge-driven research.

Database : the journal of biological databases and curation
UNLABELLED: Hypothesis generation is a critical step in research and a cornerstone in the rare disease field. Research is most efficient when those hypotheses are based on the entirety of knowledge known to date. Systematic review articles are common...

Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase.

Database : the journal of biological databases and curation
Biological knowledgebases rely on expert biocuration of the research literature to maintain up-to-date collections of data organized in machine-readable form. To enter information into knowledgebases, curators need to follow three steps: (i) identify...

Clinical Concept Embeddings Learned from Massive Sources of Multimodal Medical Data.

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing
Word embeddings are a popular approach to unsupervised learning of word relationships that are widely used in natural language processing. In this article, we present a new set of embeddings for medical concepts learned using an extremely large colle...