AIMC Topic: Databases, Factual

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Elucidating Compound Mechanism of Action and Predicting Cytotoxicity Using Machine Learning Approaches, Taking Prediction Confidence into Account.

Current protocols in chemical biology
The modes of action (MoAs) of drugs frequently are unknown, because many are small molecules initially identified from phenotypic screens, giving rise to the need to elucidate their MoAs. In addition, the high attrition rate for candidate drugs in pr...

Interactive Machine Learning for Laboratory Data Integration.

Studies in health technology and informatics
Laboratory data collected in the electronic health record as part of routine care can be used in secondary research. For example, the US Department of Veterans Affairs maintains a data warehouse covering over 20 million individuals and 6.6 billion la...

Deciphering complex metabolite mixtures by unsupervised and supervised substructure discovery and semi-automated annotation from MS/MS spectra.

Faraday discussions
Complex metabolite mixtures are challenging to unravel. Mass spectrometry (MS) is a widely used and sensitive technique for obtaining structural information of complex mixtures. However, just knowing the molecular masses of the mixture's constituents...

Open Source Infrastructure for Health Care Data Integration and Machine Learning Analyses.

JCO clinical cancer informatics
PURPOSE: We have created a cloud-based machine learning system (CLOBNET) that is an open-source, lean infrastructure for electronic health record (EHR) data integration and is capable of extract, transform, and load (ETL) processing. CLOBNET enables ...

Enhancing Case Capture, Quality, and Completeness of Primary Melanoma Pathology Records via Natural Language Processing.

JCO clinical cancer informatics
PURPOSE: Medical records contain a wealth of useful, informative data points valuable for clinical research. Most data points are stored in semistructured or unstructured legacy documents and require manual data abstraction into a structured format t...

The Use of Emotional Artificial Intelligence in Plastic Surgery.

Plastic and reconstructive surgery
BACKGROUND: The use of social media to discuss topics related to and within plastic surgery has become widespread in recent years; however, it remains unclear how to use this abundance of largely untapped data to propagate educational research in the...

Multi-omics integration-a comparison of unsupervised clustering methodologies.

Briefings in bioinformatics
With the recent developments in the field of multi-omics integration, the interest in factors such as data preprocessing, choice of the integration method and the number of different omics considered had increased. In this work, the impact of these f...

Automatic Parallel Detection of Neovascularization from Retinal Images Using Ensemble of Extreme Learning Machine.

Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference
Retinopathy screening is a non-invasive method to collect retinal images and neovascularization detection from retinal images plays a significant role on the identification and classification of diabetes retinopathy. In this paper, an automatic paral...